* using log directory ‘/srv/hornik/tmp/CRAN_pretest/bidser.Rcheck’ * using R Under development (unstable) (2026-02-08 r89382) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 21.1.8 (1+b1) Debian flang version 21.1.8 (1+b1) * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * current time: 2026-02-09 03:22:54 UTC * checking for file ‘bidser/DESCRIPTION’ ... OK * this is package ‘bidser’ version ‘0.2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/7s] NOTE Maintainer: ‘Bradley Buchsbaum ’ New submission Possibly misspelled words in DESCRIPTION: Gorgolewski (9:9) al (9:24) et (9:21) fMRIPrep (7:5) neuroimaging (4:83, 8:59) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘bidser’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/9s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [38s/44s] ERROR Running ‘testthat.R’ [38s/44s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(bidser) Attaching package: 'bidser' The following object is masked from 'package:base': parse > > test_check("bidser") Saving _problems/test_pack_bids-17.R Saving _problems/test_pack_bids-57.R levelName 1 test_proj 2 °--raw [ FAIL 3 | WARN 20 | SKIP 8 | PASS 380 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • Dataset ds007 does not have sessions - this is expected for some datasets (1): 'test_sessions.R:22:7' • On CRAN (3): 'test_mock_bids.R:345:3', 'test_mock_bids.R:403:3', 'test_mock_bids.R:526:3' • Phoneme dataset with fmriprep derivatives not available (2): 'test_preproc_mask.R:14:3', 'test_preproc_mask.R:22:3' • Test requires internet connection or derivatives dataset: argument is of length zero (1): 'test_bids_subject.R:103:5' • phoneme_stripped dataset not found - tests will be skipped (1): 'test_search_files.R:9:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_pack_bids.R:17:3'): pack_bids creates tar.gz archive with stub files ── Error in `file.exists(result)`: invalid 'file' argument Backtrace: ▆ 1. ├─testthat::expect_true(file.exists(result)) at test_pack_bids.R:17:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─base::file.exists(result) ── Error ('test_pack_bids.R:57:3'): pack_bids creates zip archive ────────────── Error in `file.exists(result)`: invalid 'file' argument Backtrace: ▆ 1. ├─testthat::expect_true(file.exists(result)) at test_pack_bids.R:57:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─base::file.exists(result) ── Error ('test_pack_bids.R:187:3'): list_pack_bids provides accurate summary ── Error in `list_pack_bids(output_file, verbose = TRUE)`: Archive file not found: /tmp/RtmpgNPzku/working_dir/RtmpykB7oN/file37f1d70390690.tar.gz Backtrace: ▆ 1. ├─utils::capture.output(...) at test_pack_bids.R:187:3 2. │ └─base::withVisible(...elt(i)) 3. └─bidser::list_pack_bids(output_file, verbose = TRUE) [ FAIL 3 | WARN 20 | SKIP 8 | PASS 380 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [8s/10s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [2s/2s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE