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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(bgms)
> 
> test_check("bgms")
[ FAIL 0 | WARN 0 | SKIP 258 | PASS 7607 ]

══ Skipped tests (258) ═════════════════════════════════════════════════════════
• On CRAN (206): 'test-bb-correction.R:86:3', 'test-bb-correction.R:107:3',
  'test-bb-correction.R:126:3', 'test-bgm-hier-spec.R:41:3',
  'test-bgm-hier-spec.R:85:3', 'test-bgm-hier-spec.R:114:3',
  'test-bgm-hier-spec.R:153:3', 'test-bgm-hier-spec.R:176:3',
  'test-bgm-hier-spec.R:190:3', 'test-bgm-hier-spec.R:209:3',
  'test-bgm-hier-spec.R:249:3', 'test-bgm-hier-spec.R:274:3',
  'test-bgm-hier-spec.R:301:3', 'test-bgm-hier-spec.R:325:3',
  'test-bgm-hier-spec.R:366:3', 'test-bgm-hier-spec.R:389:3',
  'test-bgm.R:146:3', 'test-bgm.R:238:3', 'test-bgm.R:293:3',
  'test-bgm.R:430:3', 'test-bgm.R:473:3', 'test-bgm.R:588:3',
  'test-bgm.R:637:3', 'test-bgm.R:963:3', 'test-bgm.R:1081:3',
  'test-bgm.R:1142:3', 'test-bgm.R:1163:3', 'test-bgm.R:1189:3',
  'test-bgmCompare.R:245:3', 'test-bgmCompare.R:395:3',
  'test-bgmCompare.R:466:3', 'test-calibration-check.R:2:3',
  'test-calibration-check.R:20:3', 'test-calibration-check.R:49:3',
  'test-calibration-check.R:89:3', 'test-calibration-check.R:134:3',
  'test-calibration-check.R:166:3', 'test-calibration-check.R:183:3',
  'test-calibration-check.R:227:3', 'test-calibration-check.R:246:3',
  'test-calibration-check.R:265:3', 'test-centrality.R:2:3',
  'test-centrality.R:35:3', 'test-centrality.R:56:3', 'test-centrality.R:77:3',
  'test-centrality.R:88:3', 'test-centrality.R:124:3',
  'test-correction-tables.R:152:3', 'test-correction-tables.R:190:3',
  'test-extractor-functions.R:955:3', 'test-extractor-functions.R:971:3',
  'test-extractor-functions.R:993:3', 'test-extractor-functions.R:1028:3',
  'test-extractor-functions.R:1048:3', 'test-extractor-functions.R:1063:3',
  'test-extractor-functions.R:1077:3', 'test-extractor-functions.R:1091:3',
  'test-extractor-functions.R:1105:3', 'test-extractor-functions.R:1129:3',
  'test-extractor-functions.R:1583:3', 'test-ggm-gibbs.R:126:3',
  'test-ggm-gibbs.R:140:3', 'test-ggm-gibbs.R:154:3', 'test-ggm-gibbs.R:168:3',
  'test-ggm-gibbs.R:183:3', 'test-ggm-gibbs.R:218:3', 'test-ggm-gibbs.R:239:3',
  'test-ggm-gibbs.R:259:3', 'test-hier-zratio-identity.R:25:3',
  'test-hier-zratio-identity.R:52:3', 'test-hier-zratio-identity.R:72:3',
  'test-hier-zratio-identity.R:97:3', 'test-hier-zratio-identity.R:116:3',
  'test-hier-zratio-identity.R:136:3', 'test-hier-zratio-identity.R:157:3',
  'test-hier-zratio-identity.R:191:3',
  'test-joint-realized-prior-notice.R:50:3', 'test-mcmc-diagnostics.R:388:3',
  'test-mixed-correction.R:99:3', 'test-mixed-correction.R:155:3',
  'test-mixed-correction.R:176:3', 'test-mixed-correction.R:195:3',
  'test-mixed-correction.R:218:3', 'test-mixed-correction.R:264:3',
  'test-mixed-correction.R:298:3', 'test-mixed-correction.R:317:3',
  'test-mixed-correction.R:336:3', 'test-mixed-mrf-simulate-predict.R:617:3',
  'test-mixed-mrf-simulate-predict.R:653:3',
  'test-mixed-mrf-simulate-predict.R:687:3', 'test-mixed-theta-space.R:138:3',
  'test-parameter-prior-cpp.R:560:3', 'test-plot-methods.R:12:3',
  'test-plot-methods.R:31:3', 'test-plot-methods.R:48:3',
  'test-plot-methods.R:92:3', 'test-plot-methods.R:114:3',
  'test-plot-methods.R:226:3', 'test-plot-methods.R:287:3',
  'test-plot-methods.R:303:3', 'test-plot-methods.R:313:3',
  'test-plot-methods.R:390:1', 'test-plot-methods.R:405:1',
  'test-plot-methods.R:419:1', 'test-plot-methods.R:432:1',
  'test-plot-methods.R:449:1', 'test-plot-methods.R:476:3',
  'test-plot-methods.R:507:3', 'test-plot-methods.R:532:3',
  'test-plot-methods.R:562:3', 'test-plot-methods.R:583:3',
  'test-plot-methods.R:604:3', 'test-plot-methods.R:627:3',
  'test-plot-methods.R:646:3', 'test-plot-methods.R:677:3',
  'test-plot-methods.R:702:3', 'test-plot-methods.R:714:3',
  'test-prior-inclusion-probabilities.R:109:3',
  'test-prior-inclusion-probabilities.R:134:3',
  'test-prior-inclusion-probabilities.R:151:3',
  'test-prior-inclusion-probabilities.R:178:3',
  'test-prior-inclusion-probabilities.R:208:3',
  'test-prior-inclusion-probabilities.R:238:3',
  'test-prior-inclusion-probabilities.R:253:3',
  'test-prior-inclusion-probabilities.R:275:3',
  'test-prior-inclusion-probabilities.R:300:3',
  'test-prior-inclusion-probabilities.R:321:3',
  'test-prior-inclusion-probabilities.R:337:3',
  'test-prior-sensitivity.R:119:3', 'test-prior-sensitivity.R:196:3',
  'test-prior-sensitivity.R:217:3', 'test-prior-sensitivity.R:256:3',
  'test-prior-sensitivity.R:317:3', 'test-prior-sensitivity.R:364:3',
  'test-prior-sensitivity.R:392:3', 'test-prior-sensitivity.R:426:3',
  'test-prior-sensitivity.R:475:3', 'test-regressions-2.R:9:3',
  'test-regressions-2.R:34:3', 'test-regressions-2.R:57:3',
  'test-regressions-2.R:100:3', 'test-regressions-2.R:128:3',
  'test-regressions-2.R:191:3', 'test-regressions-2.R:261:3',
  'test-regressions-2.R:290:3', 'test-regressions-2.R:317:3',
  'test-regressions-2.R:358:3', 'test-regressions-2.R:392:3',
  'test-regressions.R:37:3', 'test-regressions.R:75:3',
  'test-regressions.R:114:3', 'test-regressions.R:149:3',
  'test-sample-ggm-prior.R:284:3', 'test-sample-ggm-prior.R:301:3',
  'test-sample-ggm-prior.R:332:3', 'test-sample-graph-prior.R:133:3',
  'test-sbm-correction.R:365:3', 'test-sbm-correction.R:395:3',
  'test-sbm-correction.R:422:3', 'test-simulate-predict-regression.R:616:3',
  'test-simulate-predict-regression.R:651:3',
  'test-simulate-predict-regression.R:674:3',
  'test-simulate-predict-regression.R:728:3',
  'test-simulate-predict-regression.R:805:3', 'test-summary-marking.R:98:1',
  'test-verdicts.R:118:3', 'test-verdicts.R:145:3', 'test-verdicts.R:166:3',
  'test-verdicts.R:184:3', 'test-verdicts.R:225:3', 'test-verdicts.R:297:3',
  'test-verdicts.R:335:3', 'test-verdicts.R:386:1', 'test-verdicts.R:390:1',
  'test-warmup-schedule.R:72:3', 'test-zratio-cauchy.R:26:3',
  'test-zratio-cauchy.R:48:3', 'test-zratio-cauchy.R:78:3',
  'test-zratio-cauchy.R:97:3', 'test-zratio-cauchy.R:112:3',
  'test-zratio-extrapolation-notice.R:79:3', 'test-zratio-gamma-shape.R:60:3',
  'test-zratio-gamma-shape.R:82:3', 'test-zratio-gamma-shape.R:109:3',
  'test-zratio-gamma-shape.R:129:3', 'test-zratio-gamma-shape.R:156:3',
  'test-zratio-gamma-shape.R:198:3', 'test-zratio-gauge.R:31:3',
  'test-zratio-gauge.R:73:3', 'test-zratio-gauge.R:232:3',
  'test-zratio-gauge.R:252:3', 'test-zratio-gauge.R:388:3',
  'test-zratio-gauge.R:480:3', 'test-zratio-pivot-slice.R:42:3',
  'test-zratio-pivot-slice.R:74:3', 'test-zratio-pivot-slice.R:100:3',
  'test-zratio-pivot-slice.R:130:3', 'test-zratio-surface-build.R:38:3',
  'test-zratio-surface-build.R:88:3', 'test-zratio-surface-build.R:128:3',
  'test-zratio-surface-build.R:150:3', 'test-zratio-surface-build.R:244:3',
  'test-zratio-surface-build.R:260:3', 'test-zratio-surface-build.R:294:3',
  'test-zratio-surface-build.R:358:3', 'test-zratio-surface-extension.R:78:3'
• Set BGMS_RUN_SLOW_TESTS=true to run GGM NUTS correctness tests (6):
  'test-ggm-nuts.R:52:3', 'test-ggm-nuts.R:110:3', 'test-ggm-nuts.R:165:3',
  'test-ggm-nuts.R:199:3', 'test-ggm-nuts.R:363:3', 'test-ggm-nuts.R:385:3'
• Set BGMS_RUN_SLOW_TESTS=true to run the RB saturation-boundary tests (2):
  'test-rb-inclusion-probabilities.R:128:3',
  'test-rb-inclusion-probabilities.R:207:3'
• Set BGMS_RUN_SLOW_TESTS=true to run the estimate-survival check (T1) (1):
  'test-collapse-categories.R:566:3'
• Weekly certification tier (T2): set BGMS_RUN_CERTIFICATION=true to run.
  BGMS_RUN_SLOW_TESTS=true alone is the nightly heartbeat (T1) and does not
  enable this block. (38): 'test-hier-zratio-identity.R:209:3',
  'test-mixed-nuts.R:148:3', 'test-mixed-nuts.R:186:3',
  'test-mixed-nuts.R:221:3', 'test-mixed-nuts.R:266:3',
  'test-mixed-nuts.R:310:3', 'test-mixed-nuts.R:387:3',
  'test-mixed-nuts.R:441:3', 'test-mixed-nuts.R:504:3',
  'test-mixed-nuts.R:548:3', 'test-mixed-nuts.R:577:3',
  'test-mixed-nuts.R:603:3', 'test-parameter-recovery-ggm.R:134:3',
  'test-parameter-recovery-ggm.R:169:3', 'test-sbc-correction.R:253:3',
  'test-sbc-correction.R:263:3', 'test-sbc-correction.R:273:3',
  'test-sbc-correction.R:352:3', 'test-sbc-correction.R:369:3',
  'test-sbc-correction.R:508:3', 'test-sbc-ggm.R:123:3',
  'test-sbc-ggm.R:198:3', 'test-sbc-ggm.R:331:3', 'test-sbc-ggm.R:453:3',
  'test-sbc-ggm.R:541:3', 'test-sbc-ggm.R:642:3',
  'test-scaling-diagnostics.R:179:3', 'test-scaling-diagnostics.R:195:3',
  'test-scaling-diagnostics.R:211:3', 'test-scaling-diagnostics.R:230:3',
  'test-scaling-diagnostics.R:250:3', 'test-scaling-diagnostics.R:268:3',
  'test-scaling-diagnostics.R:286:3', 'test-scaling-diagnostics.R:309:3',
  'test-scaling-diagnostics.R:330:3', 'test-validation-slow.R:44:3',
  'test-validation-slow.R:79:3', 'test-validation-slow.R:117:3'
• fixtures/zratio_reference.rds not in this build (the tarball excludes
  tests/testthat/fixtures/) - regenerate with
  dev/validation/regenerate_zratio_reference.R (3): 'test-zratio-engine.R:8:3',
  'test-zratio-engine.R:44:3', 'test-zratio-engine.R:97:3'
• needs simulated three-block data + long run; covered by block-recovery suite
  (1): 'test-regressions.R:185:3'
• warmup-efficiency only; no effect on the posterior to assert on (1):
  'test-regressions.R:197:3'

[ FAIL 0 | WARN 0 | SKIP 258 | PASS 7607 ]
> 
> proc.time()
   user  system elapsed 
 558.00   20.62  505.50