* using log directory 'd:/RCompile/CRANincoming/R-devel/betaStability.Rcheck'
* using R Under development (unstable) (2026-05-27 r90083 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-05-28 03:25:34 UTC
* checking for file 'betaStability/DESCRIPTION' ... OK
* this is package 'betaStability' version '0.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Yu Gao <gaoyu19920914@gmail.com>'

New submission

The Title field should be in title case. Current version is:
  'An R package to quantify the "compositional stability" of one community'
In title case that is:
  'An R Package to Quantify the "Compositional Stability" of One Community'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'betaStability' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  'cran-comments.md'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [34s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
       user system elapsed
rfPred 9.22   0.48   10.13
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [33s] OK
  Running 'testthat.R' [33s]
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'rioja'
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [40s] ERROR
Error(s) in re-building vignettes:
--- re-building 'quickstart.Rmd' using rmarkdown
--- finished re-building 'quickstart.Rmd'

--- re-building 'rioja_examples.Rmd' using rmarkdown

Quitting from rioja_examples.Rmd:43-49 [load-packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'rioja'
---
Backtrace:
    ▆
 1. └─base::library(rioja)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'rioja_examples.Rmd' failed with diagnostics:
there is no package called 'rioja'
--- failed re-building 'rioja_examples.Rmd'

--- re-building 'vegan_examples.Rmd' using rmarkdown
--- finished re-building 'vegan_examples.Rmd'

SUMMARY: processing the following file failed:
  'rioja_examples.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [44s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 4 NOTEs