* using log directory ‘/srv/hornik/tmp/CRAN/beeca.Rcheck’
* using R Under development (unstable) (2024-06-10 r86717)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘beeca/DESCRIPTION’ ... OK
* this is package ‘beeca’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/8s] NOTE
Maintainer: ‘Alex Przybylski <alexander.przybylski@novartis.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Magirr (29:44)
  al (29:54, 30:9, 31:9)
  et (29:51, 30:6, 31:6)

Suggests or Enhances not in mainstream repositories:
  margins

Found the following (possibly) invalid URLs:
  URL: https://vincentarelbundock.github.io/marginaleffects/ (moved to https://marginaleffects.com/)
    From: inst/doc/estimand_and_implementations.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.ema.europa.eu/en/documents/scientific-guideline/ich-e9-r1-addendum-estimands-sensitivity-analysis-clinical-trials-guideline-statistical-principles_en.pdf (moved to https://www.ema.europa.eu/en/documents/scientific-guideline/ich-e9-r1-addendum-estimands-and-sensitivity-analysis-clinical-trials-guideline-statistical-principles-clinical-trials-step-5_en.pdf)
    From: inst/doc/estimand_and_implementations.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.tidyverse.org/lifecycle/#stable (moved to https://lifecycle.r-lib.org/articles/stages.html#stable)
    From: README.md
    Status: 301
    Message: Moved Permanently
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.

Found the following (possibly) invalid DOIs:
  DOI: 10.1177/0092861511045004092
    From: DESCRIPTION
          man/beeca-package.Rd
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘margins’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘beeca’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Authors@R field gives persons with invalid ORCID identifiers:
  Mark Baillie <mark.baillie@novartis.com> [aut] (000-0002-5618-0667)
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
sanitize_model:
  function(model, ...)
sanitize_model.glm:
  function(model, trt)

sanitize_model:
  function(model, ...)
sanitize_model.default:
  function(model, trt)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [2s/2s] OK
  Running ‘testthat.R’ [2s/2s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [3s/3s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs