* installing *source* package ‘baysc’ ... ** using staged installation Warning in .warning_nowrite(file.path(basename(pkgdir), ...)) : 'baysc/src/Makevars' already exists. Not overwritten by rstantools.FALSE Calls: ... .setup_Makevars -> .add_stanfile -> .warning_nowrite Registered S3 methods overwritten by 'RcppEigen': method from predict.fastLm RcppArmadillo print.fastLm RcppArmadillo summary.fastLm RcppArmadillo print.summary.fastLm RcppArmadillo ** libs using C++ compiler: ‘Debian clang version 18.1.8 (11)’ using C++17 clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/RcppTN/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from RcppExports.cpp:5: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ 5 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/RcppTN/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c main_Rcpp_functions.cpp -o main_Rcpp_functions.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/RcppTN/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c stanExports_SWOLCA_main.cc -o stanExports_SWOLCA_main.o In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_SWOLCA_main.cc:5: ./stanExports_SWOLCA_main.h:843:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 843 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_SWOLCA_main.cc:5: In file included from ./stanExports_SWOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 19 warnings generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -DUSE_STANC3 -D_HAS_AUTO_PTR_ETC=0 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/RcppTN/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c stanExports_WOLCA_main.cc -o stanExports_WOLCA_main.o In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:3: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:47:31: warning: 'rstan::io::r_cout_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 47 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/io/r_ostream.hpp:70:31: warning: 'rstan::io::r_cerr_streambuf::xsputn' hides overloaded virtual function [-Woverloaded-virtual] 70 | virtual std::streamsize xsputn(const char_type* s, int n) { | ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/streambuf:749:7: note: hidden overloaded virtual function 'std::basic_streambuf::xsputn' declared here: type mismatch at 2nd parameter ('streamsize' (aka 'long') vs 'int') 749 | xsputn(const char_type* __s, streamsize __n); | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] 72 | Index replacements = 0; | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:31: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] 246 | int count = 0; | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/binomial_coefficient_log.hpp:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/partials_propagator.hpp:8: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:57:1: warning: 'ops_partials_edge' defined as a struct template here but previously declared as a class template; this is valid, but may result in linker errors under the Microsoft C++ ABI [-Wmismatched-tags] 57 | struct ops_partials_edge> { | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/operands_and_partials.hpp:45:1: note: did you mean struct here? 45 | class ops_partials_edge; | ^~~~~ | struct In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:34: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/static_rational.hpp:166:10: warning: extension used [-Wlanguage-extension-token] 166 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:125:10: warning: extension used [-Wlanguage-extension-token] 125 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:35: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimension.hpp:21: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/dimension_list.hpp:131: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dimensionless_type.hpp:49:10: warning: extension used [-Wlanguage-extension-token] 49 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:39: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/linear_algebra.hpp:20: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/dim.hpp:75:10: warning: extension used [-Wlanguage-extension-token] 75 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:40: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/unscale.hpp:28: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/scale.hpp:139:10: warning: extension used [-Wlanguage-extension-token] 139 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:20: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/heterogeneous_system.hpp:120:10: warning: extension used [-Wlanguage-extension-token] 120 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:29: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/conversion.hpp:17: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/detail/conversion_impl.hpp:21: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/homogeneous_system.hpp:99:10: warning: extension used [-Wlanguage-extension-token] 99 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor.hpp:16: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/integrate_ode_rk45.hpp:6: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/functor/ode_rk45.hpp:9: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint.hpp:25: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/ublas_wrapper.hpp:30: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/algebra/default_operations.hpp:26: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/numeric/odeint/util/unit_helper.hpp:23: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/units/quantity.hpp:495:10: warning: extension used [-Wlanguage-extension-token] 495 | #include BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP() | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/typeof/typeof.hpp:28:13: note: expanded from macro 'BOOST_TYPEOF_INCREMENT_REGISTRATION_GROUP' 28 | | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:1252:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 1252 | int ret = stan::services::error_codes::CONFIG; | ^ In file included from stanExports_WOLCA_main.cc:5: ./stanExports_WOLCA_main.h:591:11: warning: variable 'pos__' set but not used [-Wunused-but-set-variable] 591 | int pos__ = std::numeric_limits::min(); | ^ In file included from stanExports_WOLCA_main.cc:5: In file included from ./stanExports_WOLCA_main.h:23: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/rstaninc.hpp:4: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include/rstan/stan_fit.hpp:43: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src/stan/io/dump.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim.hpp:14: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun.hpp:46: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/choose.hpp:7: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/binomial.hpp:15: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/beta.hpp:1721: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:29:15: warning: unused variable 'x_extrema' [-Wunused-variable] 29 | const T x_extrema = 1 / (1 + a); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:304:7: note: in instantiation of member function 'boost::math::detail::temme_root_finder::temme_root_finder' requested here 304 | temme_root_finder(-lu, alpha), x, lower, upper, policies::digits() / 2); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:615:20: note: in instantiation of function template specialization 'boost::math::detail::temme_method_2_ibeta_inverse, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 615 | x = temme_method_2_ibeta_inverse(a, b, p, r, theta, pol); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:992:17: note: in instantiation of function template specialization 'boost::math::detail::ibeta_inv_imp, boost::math::policies::promote_float, boost::math::policies::promote_double>>' requested here 992 | rx = detail::ibeta_inv_imp( | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include/boost/math/special_functions/detail/ibeta_inverse.hpp:1023:11: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 1023 | return ibeta_inv(a, b, p, static_cast(nullptr), pol); | ^ /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/stan/math/prim/fun/inv_inc_beta.hpp:32:23: note: in instantiation of function template specialization 'boost::math::ibeta_inv, boost::math::policies::pole_error, boost::math::policies::promote_double, boost::math::policies::digits2<>>>' requested here 32 | return boost::math::ibeta_inv(a, b, p, boost_policy_t<>()); | ^ 19 warnings generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o baysc.so RcppExports.o main_Rcpp_functions.o stanExports_SWOLCA_main.o stanExports_WOLCA_main.o -L/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/baysc.Rcheck/00LOCK-baysc/00new/baysc/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baysc)