* using log directory 'd:/RCompile/CRANincoming/R-devel/bayesvl.Rcheck' * using R Under development (unstable) (2025-05-16 r88213 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'bayesvl/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'bayesvl' version '1.0.0' * checking CRAN incoming feasibility ... [12s] NOTE Maintainer: 'Viet-Phuong La ' The Date field is over a month old. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bayesvl' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [22s] NOTE Found an obsolete/platform-specific call in the following function: 'openGraph' Found the platform-specific devices: 'X11' 'windows' dev.new() is the preferred way to open a new device, in the unlikely event one is needed. saveGraph: warning in savePlot(file = paste0(file, ".", type), type = sptype, ...): partial argument match of 'file' to 'filename' saveGraph: warning in savePlot(file = file, type = type, ...): partial argument match of 'file' to 'filename' bvl_compareLoo: no visible global function definition for 'loo_compare' bvl_compareWAIC: no visible global function definition for 'compare' bvl_plotAc: no visible global function definition for 'stan_ac' bvl_plotParam: no visible global function definition for 'qplot' bvl_plotParam: no visible global function definition for 'geom_segment' bvl_plotParam: no visible global function definition for 'annotate' bvl_stanLoo: no visible global function definition for 'extract_log_lik' bvl_stanLoo: no visible global function definition for 'relative_eff' bvl_stanLoo: no visible global function definition for 'loo' bvl_stanWAIC: no visible global function definition for 'extract_log_lik' bvl_stanWAIC: no visible global function definition for 'waic' openGraph: no visible global function definition for 'windows' plotMCMCDiag: no visible global function definition for 'varnames' Undefined global functions or variables: annotate compare extract_log_lik geom_segment loo loo_compare qplot relative_eff stan_ac varnames waic windows Consider adding importFrom("grDevices", "windows") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... [28s] OK * checking HTML version of manual ... OK * DONE Status: 2 NOTEs