R Under development (unstable) (2025-11-24 r89059 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(checkmate)
> library(bayestransmission)
> 
> test_check("bayestransmission")
[ FAIL 0 | WARN 0 | SKIP 22 | PASS 366 ]

══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Abstract class - tested via derived classes in other modules (1):
  'test-Module-Infect.R:46:3'
• Base class - tested via derived classes (1): 'test-Module-utils.R:6:3'
• Constructor parameters not documented - needs investigation (1):
  'test-Module-Infect.R:325:3'
• Full comparison test - set RUN_FULL_COMPARISON=1 to run (1):
  'test-cpp-comparison.R:410:3'
• LogNormalModelParams has constructor issues with default AcquisitionParams
  (1): 'test-parameter-initialization-cpp.R:382:3'
• Need to create standalone test - currently tested via integration (9):
  'test-Module-Infect.R:9:3', 'test-Module-Infect.R:14:3',
  'test-Module-Infect.R:19:3', 'test-Module-Infect.R:24:3',
  'test-Module-Infect.R:36:3', 'test-Module-Infect.R:41:3',
  'test-Module-lognormal.R:9:3', 'test-Module-lognormal.R:14:3',
  'test-Module-lognormal.R:19:3'
• On CRAN (5): 'test-likelihood-exact-parity.R:2:3',
  'test-likelihood-exact-parity.R:144:3',
  'test-likelihood-parity-diagnostic.R:2:3',
  'test-likelihood-parity-diagnostic.R:99:3',
  'test-likelihood-parity-diagnostic.R:201:3'
• Skipping interactive MCMC test (1): 'test-loglikelihood-components.R:89:3'
• Small numerical discrepancy (~0.3%) between R and C++ - needs investigation
  (1): 'test-cpp-comparison.R:312:3'
• Tested via SystemHistory properties (UnitHeads, PatientHeads, etc.) (1):
  'test-Module-utils.R:11:3'

[ FAIL 0 | WARN 0 | SKIP 22 | PASS 366 ]
> 
> proc.time()
   user  system elapsed 
  46.46    0.98   47.43