* installing *source* package ‘bayestransmission’ ...
** this is package ‘bayestransmission’ version ‘0.1.0’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.5 (1)’
using C++17
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c CodeToEvent.cpp -o CodeToEvent.o
In file included from CodeToEvent.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_AbxCoding.cpp -o infect/infect_AbxCoding.o
In file included from infect/infect_AbxCoding.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_AbxLocationState.cpp -o infect/infect_AbxLocationState.o
In file included from infect/infect_AbxLocationState.cpp:2:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_AbxPatientState.cpp -o infect/infect_AbxPatientState.o
In file included from infect/infect_AbxPatientState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_CountLocationState.cpp -o infect/infect_CountLocationState.o
In file included from infect/infect_CountLocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Episode.cpp -o infect/infect_Episode.o
In file included from infect/infect_Episode.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_EpisodeHistory.cpp -o infect/infect_EpisodeHistory.o
In file included from infect/infect_EpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Event.cpp -o infect/infect_Event.o
In file included from infect/infect_Event.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Facility.cpp -o infect/infect_Facility.o
In file included from infect/infect_Facility.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_HistoryLink.cpp -o infect/infect_HistoryLink.o
In file included from infect/infect_HistoryLink.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_LocationState.cpp -o infect/infect_LocationState.o
In file included from infect/infect_LocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Model.cpp -o infect/infect_Model.o
In file included from infect/infect_Model.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Patient.cpp -o infect/infect_Patient.o
In file included from infect/infect_Patient.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_PatientState.cpp -o infect/infect_PatientState.o
In file included from infect/infect_PatientState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_RawEvent.cpp -o infect/infect_RawEvent.o
In file included from infect/infect_RawEvent.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_Sampler.cpp -o infect/infect_Sampler.o
In file included from infect/infect_Sampler.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_SetLocationState.cpp -o infect/infect_SetLocationState.o
In file included from infect/infect_SetLocationState.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_State.cpp -o infect/infect_State.o
In file included from infect/infect_State.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_System.cpp -o infect/infect_System.o
In file included from infect/infect_System.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_SystemEpisodeHistory.cpp -o infect/infect_SystemEpisodeHistory.o
In file included from infect/infect_SystemEpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_SystemHistory.cpp -o infect/infect_SystemHistory.o
In file included from infect/infect_SystemHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c infect/infect_UnitEpisodeHistory.cpp -o infect/infect_UnitEpisodeHistory.o
In file included from infect/infect_UnitEpisodeHistory.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LinearAbxICP2.cpp -o lognormal/lognormal_LinearAbxICP2.o
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxICP2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LinearAbxICP.cpp -o lognormal/lognormal_LinearAbxICP.o
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LinearAbxModel2.cpp -o lognormal/lognormal_LinearAbxModel2.o
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxModel2.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LinearAbxModel.cpp -o lognormal/lognormal_LinearAbxModel.o
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LinearAbxModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LogNormalAbxICP.cpp -o lognormal/lognormal_LogNormalAbxICP.o
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LogNormalICP.cpp -o lognormal/lognormal_LogNormalICP.o
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LogNormalMassAct.cpp -o lognormal/lognormal_LogNormalMassAct.o
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalMassAct.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_LogNormalModel.cpp -o lognormal/lognormal_LogNormalModel.o
In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_LogNormalModel.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_MixedICP.cpp -o lognormal/lognormal_MixedICP.o
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_MixedICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c lognormal/lognormal_MultiUnitAbxICP.cpp -o lognormal/lognormal_MultiUnitAbxICP.o
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from lognormal/lognormal_MultiUnitAbxICP.cpp:1:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Markov.cpp -o Markov.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/modeling_Parameters.cpp -o modeling/modeling_Parameters.o
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/modeling_Parameters.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/modeling_TestParams.cpp -o modeling/modeling_TestParams.o
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/modeling_TestParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_AbxParams.cpp -o modeling/models_AbxParams.o
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_AbxParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_ConstrainedSimulator.cpp -o modeling/models_ConstrainedSimulator.o
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_ConstrainedSimulator.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_DummyModel.cpp -o modeling/models_DummyModel.o
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_DummyModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_ForwardSimulator.cpp -o modeling/models_ForwardSimulator.o
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_ForwardSimulator.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_InsituParams.cpp -o modeling/models_InsituParams.o
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_InsituParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_MassActionICP.cpp -o modeling/models_MassActionICP.o
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_MassActionICP.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_MassActionModel.cpp -o modeling/models_MassActionModel.o
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_MassActionModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_Options.cpp -o modeling/models_Options.o
In file included from modeling/models_Options.cpp:1:
In file included from ./modeling/Options.h:4:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
1 warning generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_OutColParams.cpp -o modeling/models_OutColParams.o
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_OutColParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
modeling/models_OutColParams.cpp:41:12: warning: variable 'z' set but not used [-Wunused-but-set-variable]
   41 |     double z = 0;
      |            ^
modeling/models_OutColParams.cpp:42:12: warning: variable 'n' set but not used [-Wunused-but-set-variable]
   42 |     double n = 0;
      |            ^
7 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_RandomTestParams.cpp -o modeling/models_RandomTestParams.o
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_RandomTestParams.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_TestParamsAbx.cpp -o modeling/models_TestParamsAbx.o
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_TestParamsAbx.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c modeling/models_UnitLinkedModel.cpp -o modeling/models_UnitLinkedModel.o
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from modeling/models_UnitLinkedModel.cpp:1:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module.cpp -o Module.o
In file included from Module.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module.cpp:4:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module-Infect.cpp -o Module-Infect.o
In file included from Module-Infect.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-Infect.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module-Infect-System.cpp -o Module-Infect-System.o
In file included from Module-Infect-System.cpp:1:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./infect/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-Infect-System.cpp:4:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module-lognormal.cpp -o Module-lognormal.o
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:17:
In file included from ./lognormal/../infect/infect.h:29:
./lognormal/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./lognormal/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./lognormal/../modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:21:
./lognormal/../modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./lognormal/../modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-lognormal.cpp:2:
In file included from ./lognormal/lognormal.h:18:
In file included from ./lognormal/../modeling/modeling.h:23:
./lognormal/../modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./lognormal/../modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module-models.cpp -o Module-models.o
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-models.cpp:2:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Module-utils.cpp -o Module-utils.o
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:16:
In file included from ./modeling/../infect/infect.h:29:
./modeling/../infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./modeling/../util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from Module-utils.cpp:2:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c Random.cpp -o Random.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c RRandom.cpp -o RRandom.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c runMCMC.cpp -o runMCMC.o
In file included from runMCMC.cpp:6:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from runMCMC.cpp:7:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c util/util.cc -o util/util.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c util/util_Integer.cpp -o util/util_Integer.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c util/util_List.cpp -o util/util_List.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c util/util_Object.cpp -o util/util_Object.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c util/util_Vector.cpp -o util/util_Vector.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I. -I./infect -I./lognormal -I./modeling -I./util -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator  -c wrap.cpp -o wrap.o
In file included from wrap.cpp:1:
In file included from ./wrap.h:8:
In file included from ./infect/infect.h:29:
./infect/RawEvent.h:23:6: warning: 'infect::RawEvent::compare' hides overloaded virtual function [-Woverloaded-virtual]
   23 |         int compare (Object const * const e) const;
      |             ^
./util/Object.h:25:14: note: hidden overloaded virtual function 'util::Object::compare' declared here: type mismatch at 1st parameter ('Object *' vs 'const Object *const')
   25 |         virtual int compare(Object *y);
      |                     ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:27:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   27 |         virtual void set(int i, int j, double value)
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 3)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 3)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:49:17: warning: 'models::TestParamsAbx::logProb' hides overloaded virtual function [-Woverloaded-virtual]
   49 |         virtual double logProb(infect::HistoryLink *const h) const;
      |                        ^
./modeling/TestParams.h:45:17: note: hidden overloaded virtual function 'models::TestParams::logProb' declared here: different qualifiers (unqualified vs 'const')
   45 |         virtual double logProb(infect::HistoryLink *h) override;
      |                        ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:21:
./modeling/TestParamsAbx.h:57:15: warning: 'models::TestParamsAbx::set' hides overloaded virtual functions [-Woverloaded-virtual]
   57 |         virtual void set(int i, int j, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
./modeling/TestParams.h:54:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (5 vs 6)
   54 |         virtual void set(int i, double value, int update, double prival, double prin);
      |                      ^
In file included from wrap.cpp:1:
In file included from ./wrap.h:9:
In file included from ./modeling/modeling.h:23:
./modeling/RandomTestParams.h:57:15: warning: 'models::RandomTestParams::set' hides overloaded virtual function [-Woverloaded-virtual]
   57 |         virtual void set(bool israte, int i, double value, int update, double prival, double prin);
      |                      ^
./modeling/TestParams.h:26:15: note: hidden overloaded virtual function 'models::TestParams::set' declared here: different number of parameters (2 vs 6)
   26 |         virtual void set(int i, double value)
      |                      ^
5 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o bayestransmission.so CodeToEvent.o infect/infect_AbxCoding.o infect/infect_AbxLocationState.o infect/infect_AbxPatientState.o infect/infect_CountLocationState.o infect/infect_Episode.o infect/infect_EpisodeHistory.o infect/infect_Event.o infect/infect_Facility.o infect/infect_HistoryLink.o infect/infect_LocationState.o infect/infect_Model.o infect/infect_Patient.o infect/infect_PatientState.o infect/infect_RawEvent.o infect/infect_Sampler.o infect/infect_SetLocationState.o infect/infect_State.o infect/infect_System.o infect/infect_SystemEpisodeHistory.o infect/infect_SystemHistory.o infect/infect_UnitEpisodeHistory.o lognormal/lognormal_LinearAbxICP2.o lognormal/lognormal_LinearAbxICP.o lognormal/lognormal_LinearAbxModel2.o lognormal/lognormal_LinearAbxModel.o lognormal/lognormal_LogNormalAbxICP.o lognormal/lognormal_LogNormalICP.o lognormal/lognormal_LogNormalMassAct.o lognormal/lognormal_LogNormalModel.o lognormal/lognormal_MixedICP.o lognormal/lognormal_MultiUnitAbxICP.o Markov.o modeling/modeling_Parameters.o modeling/modeling_TestParams.o modeling/models_AbxParams.o modeling/models_ConstrainedSimulator.o modeling/models_DummyModel.o modeling/models_ForwardSimulator.o modeling/models_InsituParams.o modeling/models_MassActionICP.o modeling/models_MassActionModel.o modeling/models_Options.o modeling/models_OutColParams.o modeling/models_RandomTestParams.o modeling/models_TestParamsAbx.o modeling/models_UnitLinkedModel.o Module.o Module-Infect.o Module-Infect-System.o Module-lognormal.o Module-models.o Module-utils.o Random.o RcppExports.o RRandom.o runMCMC.o util/util.o util/util_Integer.o util/util_List.o util/util_Object.o util/util_Vector.o wrap.o -llapack -L/home/hornik/tmp/R-d-clang-21/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -lstdc++ -L/home/hornik/tmp/R-d-clang-21/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/bayestransmission.Rcheck/00LOCK-bayestransmission/00new/bayestransmission/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayestransmission)