* installing *source* package ‘bayesWatch’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DRJ_MCMC_Step.cpp -o DRJ_MCMC_Step.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MHratios.cpp -o MHratios.o MHratios.cpp:146:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] int sub_qp = counter; ^ MHratios.cpp:135:5: note: previous statement is here for( j = 1; j < dim; j++ ) ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigen:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigen:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 4 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c copula.cpp -o copula.o copula.cpp:62:12: warning: variable 'current_Z' set but not used [-Wunused-but-set-variable] double current_Z; ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dmvnrm_arma_mc.cpp -o dmvnrm_arma_mc.o dmvnrm_arma_mc.cpp:12:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] x[j] = tmp; ^ dmvnrm_arma_mc.cpp:10:5: note: previous statement is here for(unsigned i = 0; i <= j; ++i) ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c draw_latent_data.cpp -o draw_latent_data.o draw_latent_data.cpp:394:12: warning: variable 'log_proposal_density' set but not used [-Wunused-but-set-variable] double log_proposal_density = 0.0; ^ draw_latent_data.cpp:459:14: warning: variable 'log_proposal_density' set but not used [-Wunused-but-set-variable] double log_proposal_density = 0.0; ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gwish.cpp -o gwish.o gwish.cpp:76:8: warning: unused variable 'uplo' [-Wunused-variable] char uplo = 'U'; ^ gwish.cpp:77:7: warning: unused variable 'info' [-Wunused-variable] int info; ^ gwish.cpp:96:8: warning: unused variable 'jobz' [-Wunused-variable] char jobz = 'N'; ^ gwish.cpp:97:8: warning: unused variable 'uplo' [-Wunused-variable] char uplo = 'L'; ^ gwish.cpp:98:7: warning: unused variable 'lda' [-Wunused-variable] int lda = p; ^ gwish.cpp:101:7: warning: unused variable 'LWORK' [-Wunused-variable] int LWORK=5*N; ^ gwish.cpp:110:11: warning: variable 'info' is uninitialized when used here [-Wuninitialized] if(0==info) ^~~~ gwish.cpp:102:11: note: initialize the variable 'info' to silence this warning int info; ^ = 0 gwish.cpp:125:10: warning: unused variable 'a' [-Wunused-variable] double a=1.0; ^ gwish.cpp:126:10: warning: unused variable 'c' [-Wunused-variable] double c=0.0; ^ gwish.cpp:127:8: warning: unused variable 'CblasTrans' [-Wunused-variable] char CblasTrans = 'N'; ^ gwish.cpp:154:10: warning: unused variable 'a' [-Wunused-variable] double a = 1.0; ^ gwish.cpp:155:10: warning: unused variable 'c' [-Wunused-variable] double c = 0.0; ^ gwish.cpp:156:8: warning: unused variable 'CblasTrans' [-Wunused-variable] char CblasTrans = 'T'; ^ gwish.cpp:167:8: warning: unused variable 'uplo' [-Wunused-variable] char uplo = 'U'; ^ gwish.cpp:168:7: warning: unused variable 'info' [-Wunused-variable] int info; ^ gwish.cpp:666:10: warning: variable 'dblP' set but not used [-Wunused-but-set-variable] double dblP; ^ 16 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c matrix.cpp -o matrix.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mixture_redraw_functions.cpp -o mixture_redraw_functions.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c newgraph.cpp -o newgraph.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rgwish.cpp -o rgwish.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o bayesWatch.so DRJ_MCMC_Step.o MHratios.o RcppExports.o copula.o dmvnrm_arma_mc.o draw_latent_data.o gwish.o matrix.o mixture_redraw_functions.o newgraph.o rgwish.o -llapack -L/home/hornik/tmp/R-d-clang-16/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /srv/hornik/tmp/CRAN/bayesWatch.Rcheck/00LOCK-bayesWatch/00new/bayesWatch/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bayesWatch)