* installing *source* package ‘bayesWatch’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (15)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c DRJ_MCMC_Step.cpp -o DRJ_MCMC_Step.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MHratios.cpp -o MHratios.o MHratios.cpp:146:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] int sub_qp = counter; ^ MHratios.cpp:135:5: note: previous statement is here for( j = 1; j < dim; j++ ) ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigen:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Eigen:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:33: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:6: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:40: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 4 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c copula.cpp -o copula.o copula.cpp:62:12: warning: variable 'current_Z' set but not used [-Wunused-but-set-variable] double current_Z; ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c dmvnrm_arma_mc.cpp -o dmvnrm_arma_mc.o dmvnrm_arma_mc.cpp:12:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] x[j] = tmp; ^ dmvnrm_arma_mc.cpp:10:5: note: previous statement is here for(unsigned i = 0; i <= j; ++i) ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c draw_latent_data.cpp -o draw_latent_data.o draw_latent_data.cpp:77:9: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] if( ((int)is_continuous.at(index) == 0) & ((int)row_is_missing.at(index) == 0) ){ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && draw_latent_data.cpp:77:9: note: cast one or both operands to int to silence this warning draw_latent_data.cpp:129:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] } else if(((int)is_continuous.at(index) == 0) & ((int)row_is_missing.at(index) == 0) & ((int)is_ordinal.at(index) == 0) & ((int)level_indicator_for_var > 0) ){ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && draw_latent_data.cpp:129:15: note: cast one or both operands to int to silence this warning draw_latent_data.cpp:129:15: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] } else if(((int)is_continuous.at(index) == 0) & ((int)row_is_missing.at(index) == 0) & ((int)is_ordinal.at(index) == 0) & ((int)level_indicator_for_var > 0) ){ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && draw_latent_data.cpp:129:15: note: cast one or both operands to int to silence this warning draw_latent_data.cpp:192:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] } else if( ((int)is_continuous.at(index) == 0) & ((int)row_is_missing.at(index) == 0) & ((int)is_ordinal.at(index) == 1) ){ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && draw_latent_data.cpp:192:16: note: cast one or both operands to int to silence this warning draw_latent_data.cpp:192:16: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical] } else if( ((int)is_continuous.at(index) == 0) & ((int)row_is_missing.at(index) == 0) & ((int)is_ordinal.at(index) == 1) ){ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ && draw_latent_data.cpp:192:16: note: cast one or both operands to int to silence this warning draw_latent_data.cpp:394:12: warning: variable 'log_proposal_density' set but not used [-Wunused-but-set-variable] double log_proposal_density = 0.0; ^ draw_latent_data.cpp:459:14: warning: variable 'log_proposal_density' set but not used [-Wunused-but-set-variable] double log_proposal_density = 0.0; ^ 7 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/RcppEigen/include' -I'/srv/hornik/tmp/R-d-clang-16/library/Matrix/include' -I'/srv/hornik/tmp/CRAN/Library/CholWishart/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gwish.cpp -o gwish.o gwish.cpp:5:10: fatal error: 'mkl_cblas.h' file not found #include "mkl_cblas.h" ^~~~~~~~~~~~~ 1 error generated. make: *** [/home/hornik/tmp/R/etc/Makeconf:198: gwish.o] Error 1 ERROR: compilation failed for package ‘bayesWatch’ * removing ‘/srv/hornik/tmp/CRAN/bayesWatch.Rcheck/bayesWatch’