Package check result: NOTE Check: CRAN incoming feasibility, Result: NOTE Maintainer: ‘Hana Sevcikova ’ Found the following (possibly) invalid URLs: URL: https://bayespop.csss.washington.edu From: DESCRIPTION Status: Error Message: server verification failed: certificate signer not trusted. (CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none) Changes to worse in reverse depends: Package: bayesMig Check: examples New result: ERROR Running examples in ‘bayesMig-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: mig.predict > ### Title: Generate posterior trajectories of net migration rates > ### Aliases: mig.predict bayesMig.prediction > > ### ** Examples > > # Toy simulation for US states > us.mig.file <- file.path(find.package("bayesMig"), "extdata", "USmigrates.txt") > sim.dir <- tempfile() > m <- run.mig.mcmc(nr.chains = 2, iter = 30, thin = 1, my.mig.file = us.mig.file, + output.dir = sim.dir, present.year = 2017, annual = TRUE) Starting Bayesian Hierarchical Model Migration. ======================================================== Initialize simulation - 2 chain(s) in total. Chain nr. 1 ************ Starting values: mu a -0.1 1.1 Store initial values into mc1 Flushing results into disk. Start sampling - 30 iterations in total. Iteration: 10 -- Fri Nov 8 01:35:42 2024 Iteration: 20 -- Fri Nov 8 01:35:42 2024 Iteration: 30 -- Fri Nov 8 01:35:42 2024 Flushing results into disk. Chain nr. 2 ************ Starting values: mu a 0.1 5.0 Store initial values into mc2 Flushing results into disk. Start sampling - 30 iterations in total. Iteration: 10 -- Fri Nov 8 01:35:42 2024 Iteration: 20 -- Fri Nov 8 01:35:42 2024 Iteration: 30 -- Fri Nov 8 01:35:42 2024 Flushing results into disk. Results stored in /home/hornik/tmp/scratch/RtmpXWTHUX/file1e043d5edb31c7 Simulation successfully finished!!! > > # Prediction > pred <- mig.predict(sim.dir = sim.dir, burnin = 5, end.year = 2050) Loading chain 1 from disk. (mcmc.list[[ 1 ]]). Loading chain 2 from disk. (mcmc.list[[ 2 ]]). Prediction from 2018 until 2050 (i.e. 33 projections) Storing thinned mcmc: Storing country-independent parameters ...done. Storing country-specific parameters ...done. Migration projection trajectory 1 Migration projection trajectory 2 Migration projection trajectory 3 Migration projection trajectory 4 Migration projection trajectory 5 Migration projection trajectory 6 Migration projection trajectory 7 Migration projection trajectory 8 Migration projection trajectory 9 Migration projection trajectory 10 Migration projection trajectory 11 Migration projection trajectory 12 Migration projection trajectory 13 Migration projection trajectory 14 Migration projection trajectory 15 Migration projection trajectory 16 Migration projection trajectory 17 Migration projection trajectory 18 Migration projection trajectory 19 Migration projection trajectory 20 Migration projection trajectory 21 Migration projection trajectory 22 Migration projection trajectory 23 Migration projection trajectory 24 Migration projection trajectory 25 Migration projection trajectory 26 Migration projection trajectory 27 Migration projection trajectory 28 Migration projection trajectory 29 Migration projection trajectory 30 Migration projection trajectory 31 Migration projection trajectory 32 Migration projection trajectory 33 Migration projection trajectory 34 Migration projection trajectory 35 Migration projection trajectory 36 Migration projection trajectory 37 Migration projection trajectory 38 Migration projection trajectory 39 Migration projection trajectory 40 Migration projection trajectory 41 Migration projection trajectory 42 Migration projection trajectory 43 Migration projection trajectory 44 Migration projection trajectory 45 Migration projection trajectory 46 Migration projection trajectory 47 Migration projection trajectory 48 Migration projection trajectory 49 Migration projection trajectory 50 Creating summary files ... Error in cbind(this.result1, proj.result) : number of rows of matrices must match (see arg 2) Calls: mig.predict ... mig.write.projection.summary -> -> cbind Execution halted Package: bayesMig Check: tests New result: ERROR Running ‘run_tests.R’ [2s/2s] Running ‘test_functions.R’ [0s/0s] Running the tests in ‘tests/run_tests.R’ failed. Complete output: > library(bayesMig) Loading required package: bayesTFR > source('test_functions.R') > > #options(error=quote(dump.frames("last.dump", TRUE))) > > cran <- TRUE > > test.run.annual.simulation() <=== Starting test of running annual migration MCMC for US states ==== Starting Bayesian Hierarchical Model Migration. ======================================================== Initialize simulation - 2 chain(s) in total. Chain nr. 1 ************ Starting values: mu a -0.1 1.1 Store initial values into mc1 Flushing results into disk. Start sampling - 30 iterations in total. Iteration: 10 -- Fri Nov 8 01:35:44 2024 Iteration: 20 -- Fri Nov 8 01:35:44 2024 Iteration: 30 -- Fri Nov 8 01:35:44 2024 Flushing results into disk. Chain nr. 2 ************ Starting values: mu a 0.1 5.0 Store initial values into mc2 Flushing results into disk. Start sampling - 30 iterations in total. Iteration: 10 -- Fri Nov 8 01:35:44 2024 Iteration: 20 -- Fri Nov 8 01:35:44 2024 Iteration: 30 -- Fri Nov 8 01:35:44 2024 Flushing results into disk. Results stored in /home/hornik/tmp/scratch/RtmpgttYpw/file1e04d021d55173 Simulation successfully finished!!! ==== Test of running annual migration MCMC for US states OK.===> <=== Starting test of running annual projections ==== Loading chain 1 from disk. (mcmc.list[[ 1 ]]). Loading chain 2 from disk. (mcmc.list[[ 2 ]]). Prediction from 2018 until 2050 (i.e. 33 projections) Storing thinned mcmc: Storing country-independent parameters ...done. Storing country-specific parameters ...done. Migration projection trajectory 1 Migration projection trajectory 2 Migration projection trajectory 3 Migration projection trajectory 4 Migration projection trajectory 5 Migration projection trajectory 6 Migration projection trajectory 7 Migration projection trajectory 8 Migration projection trajectory 9 Migration projection trajectory 10 Migration projection trajectory 11 Migration projection trajectory 12 Migration projection trajectory 13 Migration projection trajectory 14 Migration projection trajectory 15 Migration projection trajectory 16 Migration projection trajectory 17 Migration projection trajectory 18 Migration projection trajectory 19 Migration projection trajectory 20 Migration projection trajectory 21 Migration projection trajectory 22 Migration projection trajectory 23 Migration projection trajectory 24 Migration projection trajectory 25 Migration projection trajectory 26 Migration projection trajectory 27 Migration projection trajectory 28 Migration projection trajectory 29 Migration projection trajectory 30 Migration projection trajectory 31 Migration projection trajectory 32 Migration projection trajectory 33 Migration projection trajectory 34 Migration projection trajectory 35 Migration projection trajectory 36 Migration projection trajectory 37 Migration projection trajectory 38 Migration projection trajectory 39 Migration projection trajectory 40 Creating summary files ... Error in cbind(this.result1, proj.result) : number of rows of matrices must match (see arg 2) Calls: test.run.annual.simulation ... mig.write.projection.summary -> -> cbind Execution halted