# MCMC can be calculated correctly. Code unclass(summary(mcmc_res1)) Output $call mem_mcmc(responses = vemu_wide1$responders, size = vemu_wide1$evaluable, name = vemu_wide1$baskets, p0 = 0.15, mcmc_iter = 100, mcmc_burnin = 100, cluster_analysis = TRUE) $basket The Null Response Rates (alternative is greater): NSCLC ECD or LCH ATC Null 0.15 0.15 0.150 Posterior Prob 1.00 1.00 0.996 Posterior Mean and Median Response Rates: NSCLC ECD or LCH ATC Mean 0.405 0.405 0.397 Median 0.404 0.403 0.397 Highest Posterior Density Interval with Coverage Probability 0.95: NSCLC ECD or LCH ATC Lower Bound 0.250 0.253 0.233 Upper Bound 0.556 0.556 0.563 Posterior Effective Sample Size: NSCLC ECD or LCH ATC 38.34 38.766 32.36 $cluster Cluster 1 "NSCLC" "ECD or LCH" "ATC" The Null Response Rates (alternative is greater): Cluster 1 Posterior for null of 0.15 0.999 Posterior Mean and Median Response Rates: Cluster 1 Mean 0.402 Median 0.401 Highest Posterior Density Interval with Coverage Probability 0.95: Cluster 1 Lower Bound 0.248 Upper Bound 0.561 Posterior Effective Sample Size: Cluster 1 36.304 # Exact corner case models Code summary(mem_mcmc(responses = c(4, 3, 0), size = c(10, 3, 0), name = letters[1:3], cluster_analysis = TRUE, mcmc_iter = 100, mcmc_burnin = 100, p0 = 0.25)) Output -- The MEM Model Call ---------------------------------------------------------- mem_mcmc(responses = c(4, 3, 0), size = c(10, 3, 0), name = letters[1:3], p0 = 0.25, mcmc_iter = 100, mcmc_burnin = 100, cluster_analysis = TRUE) -- The Basket Summary ---------------------------------------------------------- The Null Response Rates (alternative is greater): a b c Null 0.250 0.250 0.250 Posterior Prob 0.867 0.997 0.852 Posterior Mean and Median Response Rates: a b c Mean 0.414 0.862 0.602 Median 0.408 0.927 0.603 Highest Posterior Density Interval with Coverage Probability 0.95: a b c Lower Bound 0.148 0.51 0.056 Upper Bound 0.694 1.00 1.000 Posterior Effective Sample Size: a b c 11.042 5.602 1.947 -- The Cluster Summary --------------------------------------------------------- Cluster 1 "a" Cluster 2 "b" Cluster 3 "c" The Null Response Rates (alternative is greater): Cluster 1 Cluster 2 Cluster 3 Posterior for null of 0.25 0.867 0.997 0.852 Posterior Mean and Median Response Rates: Cluster 1 Cluster 2 Cluster 3 Mean 0.414 0.862 0.602 Median 0.408 0.927 0.603 Highest Posterior Density Interval with Coverage Probability 0.95: Cluster 1 Cluster 2 Cluster 3 Lower Bound 0.148 0.51 0.056 Upper Bound 0.694 1.00 1.000 Posterior Effective Sample Size: Cluster 1 Cluster 2 Cluster 3 11.042 5.602 1.947 --- Code summary(mem_mcmc(responses = c(4, 3), size = c(10, 3), name = letters[1:2], cluster_analysis = TRUE, mcmc_iter = 100, mcmc_burnin = 100, p0 = 0.25)) Output -- The MEM Model Call ---------------------------------------------------------- mem_mcmc(responses = c(4, 3), size = c(10, 3), name = letters[1:2], p0 = 0.25, mcmc_iter = 100, mcmc_burnin = 100, cluster_analysis = TRUE) -- The Basket Summary ---------------------------------------------------------- The Null Response Rates (alternative is greater): a b Null 0.250 0.250 Posterior Prob 0.871 0.997 Posterior Mean and Median Response Rates: a b Mean 0.417 0.851 Median 0.412 0.921 Highest Posterior Density Interval with Coverage Probability 0.95: a b Lower Bound 0.146 0.483 Upper Bound 0.695 1.000 Posterior Effective Sample Size: a b 10.916 5.321 -- The Cluster Summary --------------------------------------------------------- Cluster 1 "a" Cluster 2 "b" The Null Response Rates (alternative is greater): Cluster 1 Cluster 2 Posterior for null of 0.25 0.871 0.997 Posterior Mean and Median Response Rates: Cluster 1 Cluster 2 Mean 0.417 0.851 Median 0.412 0.921 Highest Posterior Density Interval with Coverage Probability 0.95: Cluster 1 Cluster 2 Lower Bound 0.146 0.483 Upper Bound 0.695 1.000 Posterior Effective Sample Size: Cluster 1 Cluster 2 10.916 5.321 --- Code summary(mem_mcmc(responses = c(4, 3), size = c(10, 3), name = letters[1:2], cluster_analysis = FALSE, mcmc_iter = 100, mcmc_burnin = 100, p0 = 0.25)) Output -- The MEM Model Call ---------------------------------------------------------- mem_mcmc(responses = c(4, 3), size = c(10, 3), name = letters[1:2], p0 = 0.25, mcmc_iter = 100, mcmc_burnin = 100, cluster_analysis = FALSE) -- The Basket Summary ---------------------------------------------------------- The Null Response Rates (alternative is greater): a b Null 0.250 0.250 Posterior Prob 0.871 0.997 Posterior Mean and Median Response Rates: a b Mean 0.417 0.851 Median 0.412 0.921 Highest Posterior Density Interval with Coverage Probability 0.95: a b Lower Bound 0.146 0.483 Upper Bound 0.695 1.000 Posterior Effective Sample Size: a b 10.916 5.321