downloading reverse dependencies ‘funcml’, ‘mimar’, ‘missknn’, ‘testflow’ trying URL 'file:///data/Repositories/CRAN/src/contrib/funcml_0.9.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mimar_1.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/missknn_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/testflow_1.0.5.tar.gz' installing dependencies ‘ada’, ‘basetable’, ‘dbarts’, ‘densemlp’, ‘fastgbm’, ‘functionals’, ‘gggenes’, ‘mimar’, ‘missknn’, ‘panglm’, ‘PowerTOST’ begin installing package ‘functionals’ begin installing package ‘basetable’ begin installing package ‘ada’ begin installing package ‘dbarts’ begin installing package ‘densemlp’ begin installing package ‘fastgbm’ begin installing package ‘gggenes’ begin installing package ‘panglm’ begin installing package ‘PowerTOST’ * installing *source* package ‘functionals’ ... ** this is package ‘functionals’ version ‘0.6.0’ ** package ‘functionals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (functionals) * installing *source* package ‘ada’ ... ** this is package ‘ada’ version ‘2.0-5.1’ ** package ‘ada’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ada) * installing *source* package ‘gggenes’ ... ** this is package ‘gggenes’ version ‘0.7.0’ ** package ‘gggenes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gggenes) * installing *source* package ‘PowerTOST’ ... ** this is package ‘PowerTOST’ version ‘1.5-7’ ** package ‘PowerTOST’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PowerTOST) * installing *source* package ‘fastgbm’ ... ** this is package ‘fastgbm’ version ‘0.7.1’ ** package ‘fastgbm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXrquWE/R.INSTALL103a2f2558a7b7/fastgbm/src' g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -I/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include -fpic -g -O2 -Wall -pedantic -mtune=native -c fastgbm.cpp -o fastgbm.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastgbm.so fastgbm.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXrquWE/R.INSTALL103a2f2558a7b7/fastgbm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastgbm/00new/fastgbm/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastgbm) * installing *source* package ‘basetable’ ... ** this is package ‘basetable’ version ‘1.4.6’ ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpjm1jWm/R.INSTALL103a2d2fd6bc08/basetable/src' g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_agg.cpp -o bt_agg.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_altrep.cpp -o bt_altrep.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_engine.cpp -o bt_engine.o bt_engine.cpp: In function ‘void {anonymous}::gather_atomic(SEXP, SEXP, const std::vector&)’: bt_engine.cpp:220:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 220 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~ bt_engine.cpp:220:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 220 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~~~ bt_engine.cpp:222:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 222 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~ bt_engine.cpp:222:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 222 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~~~ bt_engine.cpp:224:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 224 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~ bt_engine.cpp:224:67: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 224 | for (R_xlen_t i = 0; i < n; ++i) d[i] = s[rows[(size_t)i]]; break; } | ^~~~~ g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_index.cpp -o bt_index.o bt_index.cpp: In function ‘size_t bt::split_row(const char*, size_t, const Options&, std::vector >&, std::string&)’: bt_index.cpp:295:17: warning: unused variable ‘fstart’ [-Wunused-variable] 295 | const char* fstart = row + i; | ^~~~~~ g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_init.cpp -o bt_init.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_read.cpp -o bt_read.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DBT_HAVE_THREADS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bt_write.cpp -o bt_write.o g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o basetable.so bt_agg.o bt_altrep.o bt_engine.o bt_index.o bt_init.o bt_read.o bt_write.o -lpthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpjm1jWm/R.INSTALL103a2d2fd6bc08/basetable/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-basetable/00new/basetable/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (basetable) begin installing package ‘missknn’ * installing *source* package ‘densemlp’ ... ** this is package ‘densemlp’ version ‘0.9.0’ ** package ‘densemlp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7bY6gO/R.INSTALL103a2b4760b441/densemlp/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mlp.cpp -o mlp.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o densemlp.so RcppExports.o mlp.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7bY6gO/R.INSTALL103a2b4760b441/densemlp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-densemlp/00new/densemlp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (densemlp) * installing *source* package ‘dbarts’ ... ** this is package ‘dbarts’ version ‘0.9-34’ ** package ‘dbarts’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-16 accepts -g... yes checking for gcc-16 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-16 -E checking whether the compiler supports GNU C++... yes checking whether g++-16 -std=gnu++20 accepts -g... yes checking for g++-16 -std=gnu++20 option to enable C++11 features... -std=gnu++11 checking how to run the C++ preprocessor... g++-16 -std=gnu++20 -std=gnu++11 -E checking for C/C++ restrict keyword... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for C compiler vendor... gnu checking whether C compiler accepts ... yes checking whether C compiler accepts -msse2... yes checking whether C compiler accepts -msse4.1... yes checking whether C compiler accepts -mavx... yes checking whether C compiler accepts -mavx2... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc-16 is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for cstdint... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for malloc.h... yes checking for int64_t... yes checking for uint64_t... yes checking size of size_t... 8 checking alignment of void*... 8 checking for gettimeofday... yes checking for clock_gettime... yes checking for ffs... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for g++-16 -std=gnu++20 -std=gnu++11 options needed to detect all undeclared functions... none needed checking whether strerror_r is declared... yes checking whether strerror_r returns char *... yes checking for snprintf... yes checking if g++ supports namespace std... yes checking whether snprintf is in std::... yes checking for log1p... yes checking whether log1p is in std::... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.hpp config.status: creating src/dbarts/config.hpp config.status: creating src/misc/config.h config.status: creating src/external/config.h config.status: creating inst/include/dbarts/types.hpp config.status: creating src/include/misc/types.h ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_C_interface.cpp -o R_C_interface.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface.cpp -o R_interface.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_common.cpp -o R_interface_common.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_crossvalidate.cpp -o R_interface_crossvalidate.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_rbart.cpp -o R_interface_rbart.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_sampler.cpp -o R_interface_sampler.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crossvalidate.cpp -o crossvalidate.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c guessNumCores.cpp -o guessNumCores.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c makeModelMatrixFromDataFrame.c -o makeModelMatrixFromDataFrame.o make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/dbarts' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c bartFit.cpp -o bartFit.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c binaryIO.cpp -o binaryIO.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c birthDeathRule.cpp -o birthDeathRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c changeRule.cpp -o changeRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c functions.cpp -o functions.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c likelihood.cpp -o likelihood.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c node.cpp -o node.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c parameterPrior.cpp -o parameterPrior.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c state.cpp -o state.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c swapRule.cpp -o swapRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c tree.cpp -o tree.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c treePrior.cpp -o treePrior.o ar -rv ../dbarts.a bartFit.o binaryIO.o birthDeathRule.o changeRule.o functions.o likelihood.o node.o parameterPrior.o state.o swapRule.o tree.o treePrior.o ar: creating ../dbarts.a a - bartFit.o a - binaryIO.o a - birthDeathRule.o a - changeRule.o a - functions.o a - likelihood.o a - node.o a - parameterPrior.o a - state.o a - swapRule.o a - tree.o a - treePrior.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/dbarts' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/external' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c io.c -o io.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c randomBase.c -o randomBase.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c randomNorm.c -o randomNorm.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c random.c -o random.o ar -rv ../external.a io.o randomBase.o randomNorm.o random.o ar: creating ../external.a a - io.o a - randomBase.o a - randomNorm.o a - random.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/external' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/misc' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -msse2 -c adaptiveRadixTree.c -o adaptiveRadixTree.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c binaryIO.c -o binaryIO.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c blockingThreadManager.c -o blockingThreadManager.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c hierarchicalThreadManager.c -o hierarchicalThreadManager.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra.c -o linearAlgebra.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments.c -o moments.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition.c -o partition.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c simd.c -o simd.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c string.c -o string.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c thread.c -o thread.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_sse2.c -o linearAlgebra_sse2.c gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_sse2.c -o linearAlgebra_sse2.c echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments_sse2.c -o moments_sse2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments_sse2.c -o moments_sse2.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse2.c -o partition_sse2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse2.c -o partition_sse2.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse4_1.c -o partition_sse4_1.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse4_1.c -o partition_sse4_1.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_avx.c -o linearAlgebra_avx.c gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_avx.c -o linearAlgebra_avx.c echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_avx2.c -o partition_avx2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_avx2.c -o partition_avx2.o ar -rv ../misc.a adaptiveRadixTree.o binaryIO.o blockingThreadManager.o hierarchicalThreadManager.o linearAlgebra.o moments.o partition.o simd.o string.o thread.o linearAlgebra_sse2.o moments_sse2.o partition_sse2.o partition_sse4_1.o linearAlgebra_avx.o partition_avx2.o ar: creating ../misc.a a - adaptiveRadixTree.o a - binaryIO.o a - blockingThreadManager.o a - hierarchicalThreadManager.o a - linearAlgebra.o a - moments.o a - partition.o a - simd.o a - string.o a - thread.o a - linearAlgebra_sse2.o a - moments_sse2.o a - partition_sse2.o a - partition_sse4_1.o a - linearAlgebra_avx.o a - partition_avx2.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/misc' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/rc' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c bounds.c -o bounds.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c util.c -o util.o ar -rv ../rc.a bounds.o util.o ar: creating ../rc.a a - bounds.o a - util.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src/rc' g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dbarts.so R_C_interface.o R_interface.o R_interface_common.o R_interface_crossvalidate.o R_interface_rbart.o R_interface_sampler.o crossvalidate.o guessNumCores.o makeModelMatrixFromDataFrame.o dbarts.a external.a misc.a rc.a -pthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsUc96j/R.INSTALL103a294df8cb07/dbarts/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dbarts/00new/dbarts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dbarts) * installing *source* package ‘missknn’ ... ** this is package ‘missknn’ version ‘1.2.0’ ** package ‘missknn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEpy5T0/R.INSTALL10429145359b88/missknn/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c missknn.cpp -o missknn.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o missknn.so RcppExports.o missknn.o -Wl,-rpath,/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/libs /home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/libs/RcppParallel.so -L/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/lib -Wl,-rpath,/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/lib -ltbb -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEpy5T0/R.INSTALL10429145359b88/missknn/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-missknn/00new/missknn/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (missknn) begin installing package ‘mimar’ * installing *source* package ‘mimar’ ... ** this is package ‘mimar’ version ‘1.4.2’ ** package ‘mimar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mimar) * installing *source* package ‘panglm’ ... ** this is package ‘panglm’ version ‘1.7.0’ ** package ‘panglm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvE9MAH/R.INSTALL103a33171413be/panglm/src' g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code_sum.cpp -o code_sum.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gmm_blocksum.cpp -o gmm_blocksum.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c irls_pooled.cpp -o irls_pooled.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c logit_irls.cpp -o logit_irls.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c negbin_irls.cpp -o negbin_irls.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_agq.cpp -o random_agq.o random_agq.cpp: In member function ‘virtual void {anonymous}::AGQWorker::operator()(std::size_t, std::size_t)’: random_agq.cpp:235:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare] 235 | double u = (mode0.length() == (R_xlen_t) gstart.length() && std::isfinite(mode0[g])) | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_binomial.cpp -o random_binomial.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_gaussian.cpp -o random_gaussian.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_negbin.cpp -o random_negbin.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_poisson.cpp -o random_poisson.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c threads.cpp -o threads.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twopart_cre.cpp -o twopart_cre.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c twoway_gaussian.cpp -o twoway_gaussian.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c within_binomial.cpp -o within_binomial.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c within_gaussian.cpp -o within_gaussian.o g++-16 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_PARALLEL_USE_TBB=0 -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c within_poisson.cpp -o within_poisson.o g++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o panglm.so RcppExports.o code_sum.o gmm_blocksum.o irls_pooled.o logit_irls.o negbin_irls.o random_agq.o random_binomial.o random_gaussian.o random_negbin.o random_poisson.o threads.o twopart_cre.o twoway_gaussian.o within_binomial.o within_gaussian.o within_poisson.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvE9MAH/R.INSTALL103a33171413be/panglm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-panglm/00new/panglm/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (panglm) checking basetable_1.4.6.tar.gz ... checking funcml_0.9.6.tar.gz ... checking mimar_1.4.2.tar.gz ... checking missknn_1.2.0.tar.gz ... checking testflow_1.0.5.tar.gz ... Depends: Package: basetable Depends: R (>= 4.2.0) Imports: parallel, stats, utils Timings: user system elapsed basetable 100.869 7.524 98.407 Results: Check status summary: OK Source packages 1 Reverse depends 4 Check results summary: basetable ... OK rdepends_funcml ... OK rdepends_mimar ... OK rdepends_missknn ... OK rdepends_testflow ... OK