# ---- subset and transform basics ------------------------------------------- test_that("pick and drop work on data frames", { out <- pick(mtcars, c("mpg", "cyl")) expect_equal(names(out), c("mpg", "cyl")) out2 <- drop(mtcars, c("disp", "hp")) expect_false(any(c("disp", "hp") %in% names(out2))) }) test_that("subset and transform support nested and pipe style", { nested <- transform(subset(mtcars, cyl == 6, select = c("mpg", "hp", "wt")), ratio = hp / wt) piped <- mtcars |> subset(cyl == 6, select = c("mpg", "hp", "wt")) |> transform(ratio = hp / wt) expect_equal(nested, piped) }) test_that("subset supports base-style negative bare-symbol select", { df <- data.frame(a = 1:3, b = 4:6, c = 7:9) expect_equal(names(subset(df, select = -a)), c("b", "c")) expect_equal(names(subset(df, select = -c(a, b))), "c") expect_equal(names(subset(df, select = c(a, c))), c("a", "c")) keep <- c("b", "c") expect_equal(names(subset(df, select = keep)), keep) }) test_that("aggregate and count summarize by groups", { agg <- aggregate(mtcars, by = "cyl", value = c("mpg", "hp"), fun = mean) expect_true(all(c("cyl", "mpg", "hp") %in% names(agg))) cnt <- count(mtcars, by = "cyl") expect_equal(sum(cnt$n), nrow(mtcars)) }) test_that("merge and key helpers behave consistently", { x <- data.frame(id = c(1, 2), value_x = c("a", "b")) y <- data.frame(id = c(1, 3), value_y = c("c", "d")) out <- merge(x, y, by = "id", all.x = TRUE) expect_equal(nrow(out), 2L) expect_equal(commonnames(x, y), "id") }) test_that("subset/pick/transform/orderrows/renamecols compose into a pipeline", { out <- mtcars |> subset(cyl == 6 & mpg > 18) |> pick(c("mpg", "cyl", "hp")) |> transform(ratio = hp / mpg) |> orderrows(by = "ratio", decreasing = TRUE) expect_s3_class(out, "basetable") expect_true(all(out$cyl == 6)) expect_equal(names(out), c("mpg", "cyl", "hp", "ratio")) renamed <- renamecols(out, horsepower = hp) expect_true("horsepower" %in% names(renamed)) compact <- transform(out, ratio2 = ratio * 2, .keep = FALSE) expect_equal(names(compact), "ratio2") }) test_that("summaries, uniquerows, row slicing, move, and rbindfill work together", { stats <- summaries(mtcars, mean_mpg = mean(mpg), n = length(mpg), by = "cyl") expect_s3_class(stats, "basetable") expect_equal(nrow(stats), length(unique(mtcars$cyl))) expect_true(all(c("cyl", "mean_mpg", "n") %in% names(stats))) uniq <- uniquerows(mtcars, cols = "cyl") expect_equal(nrow(uniq), length(unique(mtcars$cyl))) two <- firstrows(mtcars, 2) expect_equal(nrow(two), 2L) moved <- move(mtcars, "hp", before = "mpg") expect_equal(names(moved)[[1]], "hp") row_bound <- rbindfill(list(a = two, b = two), id = "source") expect_equal(nrow(row_bound), 4L) expect_true("source" %in% names(row_bound)) col_bound <- cbind(data.frame(a = 1:2), data.frame(b = 3:4)) expect_equal(names(col_bound), c("a", "b")) }) test_that("core verbs do not mutate their input", { input <- data.frame( id = c(1L, 1L, 2L), value = c(3, 3, 1) ) original <- input subset(input, value > 1) renamecols(input, key = id) uniquerows(input) input[1:2] move(input, "value") rbindfill(input, input) expect_identical(input, original) }) test_that("setthreads controls basetable defaults", { old <- getOption("basetable.threads", bt_default_threads()) on.exit(options(basetable.threads = old), add = TRUE) prev <- setthreads(1L) expect_equal(prev, old) expect_equal(bt_default_threads(), 1L) }) test_that("split and applyby operate on ordinary frames", { pieces <- split(iris, by = "Species") expect_length(pieces, 3L) stats <- applyby( iris, by = "Species", fun = function(d) data.frame(Species = d$Species[[1]], mean_sl = mean(d$Sepal.Length)) ) expect_length(stats, 3L) }) # ---- transform ------------------------------------------------------------- test_that("transform adds derived columns", { out <- transform(mtcars, ratio = mpg / cyl) expect_s3_class(out, "basetable") expect_true("ratio" %in% names(out)) expect_equal(out$ratio[[1]], mtcars$mpg[[1]] / mtcars$cyl[[1]]) }) test_that("transform() with .keep = FALSE keeps only new columns", { out <- transform(mtcars, ratio = mpg / cyl, .keep = FALSE) expect_s3_class(out, "basetable") expect_equal(names(out), "ratio") }) test_that("transform resolves values from its caller, including nested and .keep = FALSE calls", { data <- data.frame(value = 1:3) run_transform <- function(x) { multiplier <- 3 transform(x, result = value * multiplier) } run_transform_keep <- function(x) { offset <- 2 transform(x, result = value + offset) } run_transform_drop <- function(x) { denominator <- 2 transform(x, result = value / denominator, .keep = FALSE) } expect_equal(run_transform(data)$result, c(3, 6, 9)) expect_equal(run_transform_keep(data)$result, c(3, 4, 5)) expect_equal(run_transform_drop(data)$result, c(0.5, 1, 1.5)) }) test_that("transform does not confuse an evaluated result with a value column", { data <- data.frame(value = 1:3) expect_equal(transform(data, doubled = value * 2)$doubled, c(2, 4, 6)) }) test_that("transform(by =) computes expressions within each group", { data <- data.frame(g = c("a", "a", "b", "b"), x = c(1, 2, 3, 4)) out <- transform(data, cumx = cumsum(x), by = "g") expect_equal(out$cumx, c(1, 3, 3, 7)) dev <- transform(data, dev = x - mean(x), by = "g") expect_equal(dev$dev, c(-0.5, 0.5, -0.5, 0.5)) }) test_that("transform(by =) resolves external variables from its caller", { data <- data.frame(g = c("a", "a", "b", "b"), x = c(1, 2, 3, 4)) run <- function(x) { offset <- 10 transform(x, y = x + offset, by = "g") } expect_equal(run(data)$y, data$x + 10) }) test_that("transform(by =) does not mutate its input", { input <- data.frame(g = c("a", "a", "b"), x = c(1, 2, 3)) original <- input transform(input, cumx = cumsum(x), by = "g") expect_identical(input, original) }) # ---- within ---------------------------------------------------------------- test_that("within adds new columns", { out <- within(iris, ratio <- Sepal.Length / Sepal.Width) expect_s3_class(out, "basetable") expect_true("ratio" %in% names(out)) }) # ---- expr kernel ----------------------------------------------------------- test_that("bt_compile_expr only accepts the supported grammar", { d <- data.frame(a = 1:3, b = 4:6, c = 7:9, s = letters[1:3]) expect_null(bt_compile_expr(quote(sqrt(a)), d)) # unknown function expect_null(bt_compile_expr(quote(a + z), d)) # z not a column expect_null(bt_compile_expr(quote(a %in% b), d)) # unsupported op expect_null(bt_compile_expr(quote("x"), d)) # string literal expect_null(bt_compile_expr(quote(s == a), d)) # string column expect_type(bt_compile_expr(quote(a > 1 & b < c), d), "list") expect_type(bt_compile_expr(quote(ifelse(a > 0, b, -c)), d), "list") }) test_that("subset() gives identical results through the native kernel and eval()", { df <- as.data.frame(iris) df$flag <- df$Sepal.Length > 5 preds <- list( quote(Sepal.Length > 5), quote(Sepal.Length >= 5 & Petal.Width < 1), quote((Sepal.Length - Sepal.Width) / Petal.Length > 2), quote(Sepal.Length * 2 <= Petal.Length + 8), quote(!flag | Petal.Length > 4), quote(flag & !(Sepal.Width > 3)), quote(Sepal.Length %% 2 > 0.5), quote(ifelse(flag, Petal.Length, Petal.Width) > 3), quote(-Sepal.Width + Sepal.Length > 2) ) for (p in preds) { kernel <- eval(bquote(subset(df, .(p)))) r <- eval(p, df, parent.frame()) r[is.na(r)] <- FALSE manual <- df[r, , drop = FALSE] expect_equal(as.data.frame(kernel), manual, ignore_attr = TRUE, info = deparse(p)) } }) test_that("kernel matches eval() on NA propagation and three-valued logic", { df <- data.frame( x = c(1, NA, 3, 4, NA), y = c(NA, 2, 3, NA, 5), b = c(TRUE, NA, FALSE, TRUE, NA) ) for (p in list(quote(x > 2), quote(x > 2 & y < 4), quote(x > 2 | y < 4), quote(b | x > 3), quote(b & y > 1), quote(!b))) { plan <- basetable:::bt_compile_expr(p, df) r_kernel <- .Call(basetable:::bt_expr_, df, plan$code, plan$args, plan$consts, FALSE) r_eval <- eval(p, df) expect_identical(r_kernel, r_eval, info = deparse(p)) } }) test_that("subset() still errors when the predicate is not logical", { df <- data.frame(x = 1:5) expect_error(subset(df, subset = x + 1), "logical vector") }) test_that("the single-comparison fast path matches the general kernel and eval()", { df <- data.frame(a = c(1, NA, 3, 4, 5), b = c(5, 4, NA, 2, 1)) for (p in list(quote(a > b), quote(a >= 2), quote(3 < a), quote(a == b), quote(a != b), quote(a <= b), quote(b > a))) { fast <- eval(bquote(basetable::subset(df, .(p)))) r <- eval(p, df); r[is.na(r)] <- FALSE expect_equal(as.data.frame(fast), df[r, , drop = FALSE], ignore_attr = TRUE, info = deparse(p)) } }) test_that("two-comparison AND fast path matches eval()", { df <- data.frame(a = c(1, NA, 3, 4, 5, 6), b = c(6, 5, NA, 3, 2, 1), c = c(0, 1, 2, 3, 4, 5)) for (p in list(quote(a > 2 & b < 5), quote(a >= b & c < 4), quote(a < 5 & b > 1), quote(a != c & b >= 2), quote(3 < a & c <= 3))) { fast <- eval(bquote(basetable::subset(df, .(p)))) r <- eval(p, df); r[is.na(r)] <- FALSE expect_equal(as.data.frame(fast), df[r, , drop = FALSE], ignore_attr = TRUE, info = deparse(p)) } }) test_that("parallel stream compaction in subset() is correct", { skip_on_cran() set.seed(3) n <- 1.5e6 d <- data.frame(x = rnorm(n), i = sample(1:9, n, TRUE), s = sample(letters, n, TRUE), stringsAsFactors = FALSE) old <- getOption("basetable.threads"); on.exit(options(basetable.threads = old), add = TRUE) options(basetable.threads = 8L) a <- as.data.frame(subset(d, x > 0.3)) options(basetable.threads = 1L) b <- as.data.frame(subset(d, x > 0.3)) expect_identical(a, b) m <- d$x > 0.3 ref <- d[m, , drop = FALSE]; rownames(ref) <- NULL; rownames(a) <- NULL expect_equal(a, ref) }) test_that("fused filter kernel: threaded and serial agree, and match eval()", { skip_on_cran() set.seed(11) n <- 1.2e6 d <- data.frame( x = rnorm(n), y = rnorm(n), k = sample(1:5, n, TRUE), s = sample(letters, n, TRUE), stringsAsFactors = FALSE ) d$x[sample(n, 1000)] <- NA old <- getOption("basetable.threads") on.exit(options(basetable.threads = old), add = TRUE) for (p in list(quote(x > 0.5), quote(x > 0 & y < 0), quote(0.2 < x & y <= 0.3))) { options(basetable.threads = 8L) a <- as.data.frame(eval(bquote(basetable::subset(d, .(p))))) options(basetable.threads = 1L) b <- as.data.frame(eval(bquote(basetable::subset(d, .(p))))) expect_identical(a, b, info = deparse(p)) r <- eval(p, d); r[is.na(r)] <- FALSE ref <- d[r, , drop = FALSE]; rownames(ref) <- NULL expect_equal(a, ref, ignore_attr = TRUE, info = deparse(p)) } }) test_that("fused filter honours select and drops NA rows like base subset()", { set.seed(12) d <- data.frame(x = c(rnorm(50), NA, NA), g = sample(letters[1:3], 52, TRUE), id = 1:52, stringsAsFactors = FALSE) out <- as.data.frame(basetable::subset(d, x > 0, select = c("g", "id"))) ref <- d[d$x > 0 & !is.na(d$x), c("g", "id"), drop = FALSE]; rownames(ref) <- NULL expect_equal(out, ref, ignore_attr = TRUE) }) test_that("fused filter handles integer and logical columns", { d <- data.frame( i = c(1L, 2L, NA_integer_, 4L, 5L), flag = c(TRUE, FALSE, NA, TRUE, FALSE), x = seq_len(5) ) cases <- list( quote(i > 2L), quote(2L < i & i <= 5L), quote(flag == TRUE), quote(flag != FALSE & i >= 1L) ) for (p in cases) { out <- as.data.frame(eval(bquote(basetable::subset(d, .(p))))) r <- eval(p, d); r[is.na(r)] <- FALSE ref <- d[r, , drop = FALSE]; rownames(ref) <- NULL expect_equal(out, ref, ignore_attr = TRUE, info = deparse(p)) } }) test_that("shapes outside the fused kernel still work via the mask path", { set.seed(13) d <- data.frame(x = rnorm(2000), y = rnorm(2000), i = sample(1:100, 2000, TRUE)) cases <- list(quote(x > y), quote(x > 0 | y > 0), quote(abs(x) > 1)) for (p in cases) { out <- as.data.frame(eval(bquote(basetable::subset(d, .(p))))) r <- eval(p, d); r[is.na(r)] <- FALSE ref <- d[r, , drop = FALSE]; rownames(ref) <- NULL expect_equal(out, ref, ignore_attr = TRUE, info = deparse(p)) } }) # ---- pick ------------------------------------------------------------------ test_that("pick returns only selected columns", { out <- pick(mtcars, c("mpg", "cyl")) expect_s3_class(out, "basetable") expect_equal(names(out), c("mpg", "cyl")) }) # ---- drop ------------------------------------------------------------------ test_that("drop removes selected columns", { out <- drop(mtcars, c("mpg", "cyl")) expect_s3_class(out, "basetable") expect_false(any(c("mpg", "cyl") %in% names(out))) }) # ---- rename ---------------------------------------------------------------- test_that("renamecols changes column names", { out <- renamecols(mtcars, miles = mpg, cylinders = cyl) expect_s3_class(out, "basetable") expect_true(all(c("miles", "cylinders") %in% names(out))) }) test_that("renamecols does not mutate its input", { input <- data.frame(id = c(1L, 1L, 2L), value = c(3, 3, 1)) original <- input renamecols(input, key = id) expect_identical(input, original) }) test_that("rbindfill() keeps list-columns", { a <- data.frame(x = 1:2) a$l <- list(1:3, "a") b <- data.frame(x = 3L) b$l <- list(TRUE) out <- rbindfill(a, b) expect_true(is.list(out$l)) expect_identical(out$l, list(1:3, "a", TRUE)) # an input without the column contributes NULL cells out2 <- rbindfill(a, data.frame(x = 4L)) expect_identical(out2$l, list(1:3, "a", NULL)) # nested tables survive a row bind n <- nest(data.frame(g = c(1, 1, 2), v = 1:3), by = "g") nn <- rbindfill(n, n) expect_equal(nrow(nn), 4L) expect_identical(nn$data[[3]], n$data[[1]]) })