downloading reverse dependencies ‘CRE’, ‘evalITR’, ‘plotBart’, ‘tidytreatment’ trying URL 'file:///data/Repositories/CRAN/src/contrib/CRE_0.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/evalITR_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/plotBart_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidytreatment_0.3.2.tar.gz' installing dependencies ‘bartCause’, ‘rqPen’, ‘RRF’, ‘stan4bart’, ‘tmle’ also installing the dependencies ‘hqreg’, ‘hrqglas’ begin installing package ‘hqreg’ begin installing package ‘hrqglas’ begin installing package ‘stan4bart’ begin installing package ‘tmle’ begin installing package ‘RRF’ begin installing package ‘bartCause’ * installing *source* package ‘hqreg’ ... ** this is package ‘hqreg’ version ‘1.4-1’ ** package ‘hqreg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpd7rgax/R.INSTALL1dbbec6e031218/hqreg/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c data_process.c -o data_process.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hqreg.c -o hqreg.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ksav.c -o ksav.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o hqreg.so data_process.o hqreg.o init.o ksav.o util.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpd7rgax/R.INSTALL1dbbec6e031218/hqreg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hqreg/00new/hqreg/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hqreg) * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-10’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) * installing *source* package ‘hrqglas’ ... ** this is package ‘hrqglas’ version ‘1.1.2’ ** package ‘hrqglas’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsLZXj6/R.INSTALL1dbbf34709d3ab/hrqglas/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hrqglas_init.c -o hrqglas_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c solveBeta.c -o solveBeta.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o hrqglas.so hrqglas_init.o solveBeta.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsLZXj6/R.INSTALL1dbbf34709d3ab/hrqglas/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hrqglas/00new/hrqglas/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hrqglas) begin installing package ‘rqPen’ * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpErtS2E/R.INSTALL1dbbf51d2a97f1/RRF/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpErtS2E/R.INSTALL1dbbf51d2a97f1/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) * installing *source* package ‘tmle’ ... ** this is package ‘tmle’ version ‘2.1.1’ ** package ‘tmle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tmle) * installing *source* package ‘rqPen’ ... ** this is package ‘rqPen’ version ‘4.1.3’ ** package ‘rqPen’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpxi9Oo3/R.INSTALL1dc12170236294/rqPen/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c solvebetaRcpp.cpp -o solvebetaRcpp.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rqPen.so RcppExports.o solvebetaRcpp.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpxi9Oo3/R.INSTALL1dc12170236294/rqPen/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rqPen/00new/rqPen/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rqPen) * installing *source* package ‘stan4bart’ ... ** this is package ‘stan4bart’ version ‘0.0-11’ ** package ‘stan4bart’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-15 -std=gnu++17 accepts -g... (cached) yes checking for g++-15 -std=gnu++17 option to enable C++11 features... (cached) none needed checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc-15 checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x00000001 output... 406f1:39200800:7ffefbff:bfebfbff checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse2... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking size of size_t... 8 checking alignment of void*... 8 checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for ffs... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyA0sGU/R.INSTALL1dbbed37ebe90d/stan4bart/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c bart_util.cpp -o bart_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_string.c -o misc_string.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_bounds.c -o rc_bounds.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_util.c -o rc_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c stan_sampler.cpp -o stan_sampler.o In file included from include/stan/model/model_header.hpp:15, from stan_files/continuous.hpp:43, from stan_sampler.cpp:16: include/stan/model/model_base_crtp.hpp:144:17: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 144 | inline double log_prob(std::vector& theta, std::vector& theta_i, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:88:17: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 88 | inline double log_prob(Eigen::VectorXd& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:149:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 149 | inline math::var log_prob(std::vector& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:93:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 93 | inline math::var log_prob(Eigen::Matrix& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:195:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 195 | void write_array(boost::ecuyer1988& rng, std::vector& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ include/stan/model/model_base_crtp.hpp:133:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, Eigen::VectorXd&, Eigen::VectorXd&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 133 | void write_array(boost::ecuyer1988& rng, Eigen::VectorXd& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyA0sGU/R.INSTALL1dbbed37ebe90d/stan4bart/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stan4bart/00new/stan4bart/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stan4bart) checking bartCause_1.0-10.tar.gz ... checking CRE_0.2.7.tar.gz ... checking evalITR_1.0.0.tar.gz ... checking plotBart_0.1.7.tar.gz ... checking tidytreatment_0.3.2.tar.gz ... Depends: Package: bartCause Depends: R (>= 3.1-0) Imports: dbarts (>= 0.9-16), methods, stats, graphics, parallel, utils, grDevices Timings: user system elapsed bartCause 82.768 3.975 85.341 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 3 Check results summary: bartCause ... OK rdepends_CRE ... ERROR * checking tests ... [3s/3s] ERROR rdepends_evalITR ... OK rdepends_plotBart ... OK rdepends_tidytreatment ... OK Check results changes: Package: evalITR Check: CRAN incoming feasibility Old result: NOTE