downloading reverse dependencies ... downloading hdmed_1.0.1.tar.gz ... ok installing dependencies ‘bama’, ‘freebird’, ‘gcdnet’, ‘genlasso’, ‘RcppArmadillo’ begin installing package ‘freebird’ begin installing package ‘gcdnet’ begin installing package ‘genlasso’ begin installing package ‘RcppArmadillo’ * installing *source* package ‘freebird’ ... ** this is package ‘freebird’ version ‘1.0’ ** package ‘freebird’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnH7nNP/R.INSTALL1402bd2b711901/freebird/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c euc_proj.c -o euc_proj.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mymath.c -o mymath.o mymath.c: In function ‘max_fabs_vc’: mymath.c:141:11: warning: variable ‘cnt’ set but not used [-Wunused-but-set-variable] 141 | int i,cnt; | ^~~ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c slim_dantzig_ladm_scr.c -o slim_dantzig_ladm_scr.o slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr’: slim_dantzig_ladm_scr.c:262:24: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 262 | double T,T1,T2,rho,zero,eps,eps1,eps2,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:261:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 261 | int j,k,m,ndata,dim,nlambda,ite1,ite2,ite,max_ite0,max_ite1,max_ite2,num_scr,num_scr1,num_scr2,num_scr1_tmp,num_scr2_tmp,flag,flag1,flag2; | ^~~~~ slim_dantzig_ladm_scr.c: In function ‘slim_dantzig_ladm_scr2’: slim_dantzig_ladm_scr.c:411:21: warning: variable ‘zero’ set but not used [-Wunused-but-set-variable] 411 | double T,T1,rho,zero,eps,eps1,ilambda; | ^~~~ slim_dantzig_ladm_scr.c:410:15: warning: variable ‘ndata’ set but not used [-Wunused-but-set-variable] 410 | int j,k,m,ndata,dim,nlambda,ite1,ite,max_ite0,max_ite1,num_scr,num_scr1,num_scr1_tmp,flag,flag1; | ^~~~~ gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o freebird.so euc_proj.o init.o mymath.o slim_dantzig_ladm_scr.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnH7nNP/R.INSTALL1402bd2b711901/freebird/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-freebird/00new/freebird/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freebird) * installing *source* package ‘gcdnet’ ... ** this is package ‘gcdnet’ version ‘1.0.6’ ** package ‘gcdnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8HotFz/R.INSTALL1402c17128638/gcdnet/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c auxiliary.f90 -o auxiliary.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c erlassoNET.f90 -o erlassoNET.o erlassoNET.f90:264:24: 264 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] erlassoNET.f90:217:23: 217 | DOUBLE PRECISION :: al | ^~ note: ‘al’ was declared here gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c hsvmlassoNET.f90 -o hsvmlassoNET.o hsvmlassoNET.f90:262:24: 262 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] hsvmlassoNET.f90:216:23: 216 | DOUBLE PRECISION :: al | ^~ note: ‘al’ was declared here gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c loglassoNET.f90 -o loglassoNET.o loglassoNET.f90:257:24: 257 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] loglassoNET.f90:213:23: 213 | DOUBLE PRECISION :: al | ^~ note: ‘al’ was declared here gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lslassoNET.f90 -o lslassoNET.o lslassoNET.f90:256:24: 256 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] lslassoNET.f90:212:23: 212 | DOUBLE PRECISION :: al | ^~ note: ‘al’ was declared here gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c sqsvmlassoNET.f90 -o sqsvmlassoNET.o sqsvmlassoNET.f90:258:24: 258 | al = al * alf | ^ Warning: ‘al’ may be used uninitialized [-Wmaybe-uninitialized] sqsvmlassoNET.f90:213:23: 213 | DOUBLE PRECISION :: al | ^~ note: ‘al’ was declared here gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o gcdnet.so auxiliary.o erlassoNET.o hsvmlassoNET.o init.o loglassoNET.o lslassoNET.o sqsvmlassoNET.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8HotFz/R.INSTALL1402c17128638/gcdnet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-gcdnet/00new/gcdnet/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gcdnet) * installing *source* package ‘genlasso’ ... ** this is package ‘genlasso’ version ‘1.6.1’ ** package ‘genlasso’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdQ75Zp/R.INSTALL1402c01e20f421/genlasso/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrixcomps.c -o matrixcomps.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o genlasso.so init.o matrixcomps.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdQ75Zp/R.INSTALL1402c01e20f421/genlasso/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-genlasso/00new/genlasso/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genlasso) * installing *source* package ‘RcppArmadillo’ ... ** this is package ‘RcppArmadillo’ version ‘15.0.2-2’ ** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-15 -std=gnu++17 accepts -g... (cached) yes checking for g++-15 -std=gnu++17 option to enable C++11 features... (cached) none needed checking whether we have a suitable tempdir... /home/hornik/tmp/scratch checking whether R CMD SHLIB can already compile programs using OpenMP... yes checking LAPACK_LIBS... system LAPACK found configure: creating ./config.status config.status: creating inst/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5XEOYu/R.INSTALL1402bb47391e63/RcppArmadillo/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppArmadillo.cpp -o RcppArmadillo.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fastLm.cpp -o fastLm.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5XEOYu/R.INSTALL1402bb47391e63/RcppArmadillo/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RcppArmadillo) begin installing package ‘bama’ * installing *source* package ‘bama’ ... ** this is package ‘bama’ version ‘1.3.1’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm6QLsy/R.INSTALL1406c056ce87b3/bama/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bama.cpp -o bama.o In file included from /home/hornik/tmp/R-d-gcc-15/include/R.h:73, from bama.cpp:8: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h: In function ‘void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]’: /home/hornik/tmp/R-d-gcc-15/include/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion] 85 | #define warning Rf_warning | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:190:17: note: in expansion of macro ‘warning’ 190 | inline void warning(const char* fmt, Args&&... args ) { | ^~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:133, from /home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from /home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include/RcppArmadillo.h:32, from bama.cpp:9: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/exceptions.h:191:19: note: recursive call 191 | Rf_warning("%s", tfm::format(fmt, std::forward(args)... ).c_str()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppDist/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ptg.cpp -o ptg.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o bama.so RcppExports.o bama.o ptg.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm6QLsy/R.INSTALL1406c056ce87b3/bama/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bama/00new/bama/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bama) checking bama_1.3.1.tar.gz ... checking hdmed_1.0.1.tar.gz ... Depends: Package: bama Depends: R (>= 3.5) Imports: Rcpp, parallel LinkingTo: Rcpp, RcppArmadillo, RcppDist, BH Timings: user system elapsed bama 39.165 4.484 44.766 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 0 Check results summary: bama ... OK rdepends_hdmed ... NOTE * checking DESCRIPTION meta-information ... NOTE * checking Rd cross-references ... NOTE