* installing *source* package ‘babelmixr2’ ... ** using staged installation --------[begin src/Makevars]-------- # -*- mode: makefile-gmake -*- ARMA=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'` RCPP=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'` EG=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'` PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) PKG_CXXFLAGS = -Id -isystem"$(EG)" -isystem"$(RCPP)" -isystem"$(ARMA)" SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS) SHLIB_LD = $(SHLIB_CXXLD) --------[end src/Makevars]-------- ** libs using C compiler: ‘Debian clang version 18.1.8 (11)’ using C++ compiler: ‘Debian clang version 18.1.8 (11)’ clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -Id -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -Id -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c classicReverse.cpp -o classicReverse.o clang-18 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -Id -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c poped.cpp -o poped.o In file included from poped.cpp:13: In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2ptr.h:4: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:3:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 3 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-18/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -Id -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R-d-clang-18/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c transform.cpp -o transform.o In file included from transform.cpp:12: /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rxode2/include/rxode2.h:3:9: warning: 'STRICT_R_HEADERS' macro redefined [-Wmacro-redefined] 3 | #define STRICT_R_HEADERS | ^ :4:9: note: previous definition is here 4 | #define STRICT_R_HEADERS 1 | ^ 1 warning generated. clang++-18 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-18/lib -Wl,-O1 -o babelmixr2.so RcppExports.o classicReverse.o init.o poped.o transform.o -llapack -L/home/hornik/tmp/R-d-clang-18/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R-d-clang-18/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/babelmixr2.Rcheck/00LOCK-babelmixr2/00new/babelmixr2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (babelmixr2)