* using log directory ‘/srv/hornik/tmp/CRAN/bWGR.Rcheck’ * using R Under development (unstable) (2023-10-20 r85374) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (15) GNU Fortran (Debian 13.2.0-4) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘bWGR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘bWGR’ version ‘2.2.3’ * checking CRAN incoming feasibility ... [3s/6s] Note_to_CRAN_maintainers Maintainer: ‘Alencar Xavier ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘bWGR’ can be installed ... [115s/115s] OK * used C compiler: ‘Debian clang version 16.0.6 (15)’ * used C++ compiler: ‘Debian clang version 16.0.6 (15)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: ‘Alencar Xavier [aut,cre], William Muir [aut], David Habier [aut], Kyle Kocak [aut], Katy Rainey [aut], Shizhong Xu [aut].’ Authors@R: ‘Alencar Xavier [aut, cre] (), William Muir [aut], David Habier [aut], Kyle Kocak [aut], Shizhong Xu [aut], Katy Rainey [aut]’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [2s/2s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s/8s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) mvr.Rd:54: Lost braces 54 | 01) \code{mkr2X(Y,K1,K2):}{ Solves multi-trait kernel regressions with two random effects.} | ^ checkRd: (-1) mvr.Rd:56: Lost braces 56 | 02) \code{mrr2X(Y,X1,X2):}{ Solves multi-trait ridge regressions with two random effects.} | ^ checkRd: (-1) mvr.Rd:58: Lost braces 58 | 03) \code{MRR3(Y,X,...):}{ Extension of mrr with additional parameters.} | ^ checkRd: (-1) mvr.Rd:60: Lost braces 60 | 04) \code{mrr_svd(Y,W):}{ Solves mrr through the principal components of parameters.} | ^ checkRd: (-1) mvr.Rd:62: Lost braces 62 | 05) \code{MLM(Y,X,Z,maxit=500,logtol=-8,cores=1):}{ Multivariate model with fixed effects.} | ^ checkRd: (-1) mvr.Rd:64: Lost braces 64 | 06) \code{SEM(Y,Z,PCs=3,TOI=NULL,Beta0=NULL):}{ Fits a XFA structural equation model.} | ^ checkRd: (-1) mvr.Rd:66: Lost braces 66 | 07) \code{Autoencoder(Y,...):}{ Toy autoencoder. Check arguments with args(Autoencoder).} | ^ checkRd: (-1) mvr.Rd:68: Lost braces 68 | 08) \code{MvLmm(Y,Z,rerun=0,...):}{ Toy MegaLMM. Args (...) pass to Autoencoder.} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking examples ... [3s/3s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs