R Under development (unstable) (2026-09-25 r90590 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(b3gbi) > > test_check("b3gbi") ATTENTION: User-provided cell_size (0.3degrees) is smaller than the recommended minimum based on 1e+06 total cells (1degrees). This may result in a large output and long processing time. Automatically determined grid cell size of 1 km would be smaller than the grid cells of the cube. Therefore, setting cell_size to 10 km to match cube resolution. ATTENTION: User-provided cell_size (1km) is smaller than the recommended minimum based on 1e+06 total cells (32km). This may result in a large output and long processing time. Setting cell_size to match data resolution (1km). This is smaller than the recommended minimum based on 1e+06 total cells (10km). This may result in a large output and long processing time. Consider using 'auto' or manually setting a larger size. Setting cell_size to match data resolution (1km). This is smaller than the recommended minimum based on 1e+06 total cells (10km). This may result in a large output and long processing time. Consider using 'auto' or manually setting a larger size. Setting cell_size to match data resolution (1km). This is smaller than the recommended minimum based on 1e+06 total cells (10km). This may result in a large output and long processing time. Consider using 'auto' or manually setting a larger size. Setting cell_size to match data resolution (1km). This is smaller than the recommended minimum based on 1e+06 total cells (10km). This may result in a large output and long processing time. Consider using 'auto' or manually setting a larger size. Writing layer `file48b1c2cd3411b' to data source `D:\temp\2026_09_26_04_20_16_27464\Rtmpkx429e\file48b1c2cd3411b.shp' using driver `ESRI Shapefile' Writing 1 features with 0 fields and geometry type Polygon. Writing layer `file48b1c1757b8a' to data source `D:\temp\2026_09_26_04_20_16_27464\Rtmpkx429e\file48b1c1757b8a.shp' using driver `ESRI Shapefile' Writing 1 features with 0 fields and geometry type Polygon. Linking to GEOS 3.14.1, GDAL 3.12.1, PROJ 9.7.1; sf_use_s2() is TRUE Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Package 'dubicube' is not installed, so confidence intervals are calculated by indicator-level bootstrapping. i For cube-level bootstrapping, install 'dubicube' with install.packages("dubicube", repos = c("https://b-cubed-eu.r-universe.dev", "https://cloud.r-project.org")) This message is displayed once per session. [1] "All values of t are equal to 4 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 3 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 3 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 4 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 3 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 2 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 5 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 4 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 3 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 5 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 15 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 10 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 20 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 5 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 15 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 10 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 20 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" [1] "All values of t are equal to 1 \n Cannot calculate confidence intervals" Retrying intersection with S2 disabled... although coordinates are longitude/latitude, st_intersects assumes that they are planar Optimized intersection failed or returned empty. Falling back to st_filter. although coordinates are longitude/latitude, st_intersects assumes that they are planar Retrying intersection with S2 disabled... although coordinates are longitude/latitude, st_intersects assumes that they are planar although coordinates are longitude/latitude, st_within assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar although coordinates are longitude/latitude, st_intersection assumes that they are planar Removed 5 rows with missing cell codes Replaced 2 NA values with zeroes. Replaced 2 NA values with zeroes. Gridded completeness returned no results. Try lowering 'cutoff_length' or using a coarser grid. [1] "All values of t are equal to 2000 \n Cannot calculate confidence intervals" although coordinates are longitude/latitude, st_intersection assumes that they are planar [ FAIL 0 | WARN 0 | SKIP 48 | PASS 1551 ] ══ Skipped tests (48) ══════════════════════════════════════════════════════════ • On CRAN (39): 'test-add_NE_layer.R:80:3', 'test-audit-ci.R:28:3', 'test-audit-ci.R:49:3', 'test-audit-ci.R:71:3', 'test-audit-occ-density-ci.R:2:3', 'test-audit-wrappers-gridded-completeness.R:2:3', 'test-audit-wrappers-gridded-completeness.R:26:3', 'test-completeness.R:14:3', 'test-completeness.R:37:3', 'test-completeness.R:59:3', 'test-completeness.R:74:3', 'test-completeness.R:86:3', 'test-completeness.R:101:3', 'test-create_grid.R:29:3', 'test-get_NE_data.R:2:3', 'test-gridded-completeness.R:5:3', 'test-hex-grids.R:310:3', 'test-indicator_wrappers.R:1088:3', 'test-indicator_wrappers.R:1102:3', 'test-indicator_wrappers.R:1110:3', 'test-integration_add_ci.R:27:3', 'test-plot_methods.R:403:3', 'test-plot_methods.R:860:3', 'test-relative_occupancy.R:11:3', 'test-relative_occupancy.R:24:3', 'test-relative_occupancy.R:37:3', 'test-relative_occupancy.R:51:3', 'test-relative_occupancy.R:68:3', 'test-relative_occupancy.R:81:3', 'test-relative_occupancy.R:96:3', 'test-relative_occupancy.R:111:3', 'test-relative_occupancy.R:126:3', 'test-relative_occupancy.R:141:3', 'test-relative_occupancy.R:155:3', 'test-tax_distinct.R:288:3', 'test-workflow-clipping.R:5:3', 'test-workflow-clipping.R:39:3', 'test-workflow-clipping.R:58:3', 'test-workflow-clipping.R:83:3' • empty test (1): 'test-coverage_boost.R:73:1' • {dubicube} is not installed (5): 'test-add_ci.R:81:3', 'test-add_ci.R:132:3', 'test-add_ci.R:198:3', 'test-add_ci_dubicube_optional.R:59:3', 'test-calc_ts_dispatch.R:7:1' • {rnaturalearthhires} is not installed (3): 'test-add_NE_layer.R:118:3', 'test-add_NE_layer.R:148:3', 'test-add_NE_layer.R:197:3' [ FAIL 0 | WARN 0 | SKIP 48 | PASS 1551 ] > > proc.time() user system elapsed 97.04 6.12 102.14