Package check result: OK Changes to worse in reverse depends: Package: qMRI Check: re-building of vignette outputs New result: WARNING Error(s) in re-building vignettes: ... --- re-building ‘IRMRI-Example.Rnw’ using Sweave oro.nifti 0.11.4 Loading required package: awsMethods Use the function setCores() to change the number of CPU cores. Loading required package: parallel Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics: chunk 9 (label = 7) Error in vpawscov2(bpars, kstar, icovbpars, segm == 2, lambda = lambda, : NA/NaN/Inf in foreign function call (arg 14) --- failed re-building ‘IRMRI-Example.Rnw’ --- re-building ‘qMRI-Example.Rnw’ using Sweave Loading required package: awsMethods Use the function setCores() to change the number of CPU cores. Loading required package: parallel *** caught segfault *** address (nil), cause 'unknown' Traceback: 1: smoothESTATICS(modelMPM, mpmData = extract(mpm, "ddata"), kstar = 16, alpha = 0.004, patchsize = 1, verbose = FALSE) 2: eval(expr, .GlobalEnv) 3: eval(expr, .GlobalEnv) 4: withVisible(eval(expr, .GlobalEnv)) 5: doTryCatch(return(expr), name, parentenv, handler) 6: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7: tryCatchList(expr, classes, parentenv, handlers) 8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))}) 9: try(withVisible(eval(expr, .GlobalEnv)), silent = TRUE) 10: evalFunc(ce, options) 11: tryCatchList(expr, classes, parentenv, handlers) 12: tryCatch(evalFunc(ce, options), finally = { cat("\n") sink()}) 13: driver$runcode(drobj, chunk, chunkopts) 14: utils::Sweave(...) 15: engine$weave(file, quiet = quiet, encoding = enc) 16: doTryCatch(return(expr), name, parentenv, handler) 17: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 18: tryCatchList(expr, classes, parentenv, handlers) 19: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 20: tools:::.buildOneVignette("qMRI-Example.Rnw", "/home/hornik/tmp/CRAN_recheck/qMRI.Rcheck/vign_test/qMRI", TRUE, TRUE, "qMRI-Example", "", "/home/hornik/tmp/scratch/RtmpRV4XGg/file10e8a36a740684.rds") An irrecoverable exception occurred. R is aborting now ... Segmentation fault pdflatex -interaction nonstopmode IRMRI-Example.tex This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./IRMRI-Example.tex LaTeX2e <2024-06-01> patch level 2 L3 programming layer <2024-08-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/02/08 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/filecontents/filecontents.sty Package filecontents Warning: This package is obsolete. Disabling it and (filecontents) passing control to the filecontents environment (filecontents) defined by the LaTeX kernel. ) LaTeX Info: Writing file `./qmriIR.bib'. (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty)) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.sty (/usr/share/texlive/texmf-dist/tex/latex/logreq/logreq.def)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-dm.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-compat.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-bibtex.def Package biblatex Warning: Using fall-back bibtex backend: (biblatex) functionality may be reduced/unavailable. ) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.def) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/authoryear.bbx (/usr/share/texlive/texmf-dist/tex/latex/biblatex/bbx/standard.bbx)) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/cbx/authoryear.cbx) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/biblatex.cfg) (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/biblatex/blx-case-expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty))) (/home/hornik/tmp/R-d-gcc-14/share/texmf/tex/latex/Sweave.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty)) No file IRMRI-Example.aux. (/usr/share/texlive/texmf-dist/tex/latex/biblatex/lbx/english.lbx) No file IRMRI-Example.bbl. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/grfext/grfext.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) ! LaTeX Error: File `IRMRI-Example-concordance.tex' not found. Type X to quit or to proceed, or enter new name. (Default extension: tex) Enter file name: ! Emergency stop. l.54 \input{IRMRI-Example-concordance} ^^M ! ==> Fatal error occurred, no output PDF file produced! Transcript written on IRMRI-Example.log. make: *** [Makefile:3: all] Error 1 Error in tools::buildVignettes(dir = "/home/hornik/tmp/CRAN_recheck/qMRI.Rcheck/vign_test/qMRI", : running 'make' failed Execution halted Package: qMRI Check: tests New result: NOTE Running ‘qMRI-test.R’ [20s/22s] Comparing ‘qMRI-test.Rout’ to ‘qMRI-test.Rout.save’ ...85c85 < NaN 19.40759 NaN NaN --- > 0.768893 17.87941 0.8579759 5682.832 87c87 < NaN 19.14932 NaN NaN --- > 0.1163028 6.352211 0.2703803 564.6314