downloading reverse dependencies ... downloading BBEST_0.1-8.tar.gz ... ok downloading dti_1.5.4.3.tar.gz ... ok downloading fmri_1.9.12.1.tar.gz ... ok downloading qMRI_1.2.7.6.tar.gz ... ok installing dependencies ‘adimpro’, ‘aws’, ‘awsMethods’, ‘oro.dicom’ begin installing package ‘awsMethods’ begin installing package ‘oro.dicom’ * installing *source* package ‘awsMethods’ ... ** package ‘awsMethods’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8xUVdD/R.INSTALL10c88a2cc04819/awsMethods/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c omp_funcs.c -o omp_funcs.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o awsMethods.so init.o omp_funcs.o -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8xUVdD/R.INSTALL10c88a2cc04819/awsMethods/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-awsMethods/00new/awsMethods/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (awsMethods) begin installing package ‘aws’ begin installing package ‘adimpro’ * installing *source* package ‘oro.dicom’ ... ** package ‘oro.dicom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (oro.dicom) * installing *source* package ‘adimpro’ ... ** package ‘adimpro’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7beDUq/R.INSTALL10c8f135436bf0/adimpro/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rentries.c -o Rentries.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c aniso.f -o aniso.o aniso.f:206:64: 206 | integer i1,i2,j1,j2,ja1,je1,ja2,je2,l,k,n,info,kdv,jx,jy,i, | 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c awsimage.f -o awsimage.o awsimage.f:254:72: 254 | thnew(k,i1,i2)=FLOOR(swjy(k,thrednr)/swj) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] awsimage.f:198:47: 198 | integer ih,ih1,ii,i1,i2,j1,j2,k,n,thrednr, | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c awspimage.f -o awspimage.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c demosaic.f -o demosaic.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c edges.f -o edges.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c misc.f -o misc.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c segment.f -o segment.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c shrink.f -o shrink.o shrink.f:279:72: 279 | call median3(z(1,1,thrednr),k,yy,tol) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] shrink.f:205:62: 205 | integer iy1,iy2,ja1,ja2,je1,je2,jx1,jx2,k,method,thrednr | ^ note: ‘thrednr’ was declared here shrink.f:190:72: 190 | call median1(z(1,thrednr),k,yy,tol) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] shrink.f:131:62: 131 | integer iy1,iy2,ja1,ja2,je1,je2,jx1,jx2,k,method,thrednr | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c smsensor.f -o smsensor.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o adimpro.so Rentries.o aniso.o awsimage.o awspimage.o demosaic.o edges.o init.o misc.o segment.o shrink.o smsensor.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7beDUq/R.INSTALL10c8f135436bf0/adimpro/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adimpro/00new/adimpro/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adimpro) * installing *source* package ‘aws’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcSNrQu/R.INSTALL10c8ef28c106e7/aws/src' gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c ICIsmooth.f -o ICIsmooth.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rentries.c -o Rentries.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c awslp.f -o awslp.o awslp.f:571:72: 571 | trl = thrednr*dlw2 | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] awslp.f:501:48: 501 | 2 dp1,dp2,ihs,csw,dsw,l,dlw2,thrednr,trl,trs | ^ note: ‘thrednr’ was declared here awslp.f:846:72: 846 | trl = thrednr*dlw2 | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] awslp.f:776:48: 776 | 2 dp1,dp2,ihs,csw,dsw,l,dlw2,thrednr,trl,trs | ^ note: ‘thrednr’ was declared here awslp.f:94:72: 94 | trl = thrednr*dlw | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] awslp.f:37:43: 37 | 2 dp1,dp2,ihs,csw,dsw,l,thrednr,trl,trs | ^ note: ‘thrednr’ was declared here awslp.f:345:72: 345 | trl = thrednr*dlw | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] awslp.f:288:43: 288 | 2 dp1,dp2,ihs,csw,dsw,l,thrednr,trl,trs | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c awswghts.f -o awswghts.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c caws.f -o caws.o caws.f:925:72: 925 | thnew(k,iindp)=swjy(k,thrednr)/swj | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] caws.f:796:33: 796 | 2 dlw12,n12,k,thrednr,iindp,jindp | ^ note: ‘thrednr’ was declared here caws.f:1088:72: 1088 | thnew(k,iindp)=swjy(k,thrednr)/swj | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] caws.f:958:33: 958 | 2 dlw12,n12,k,thrednr,iindp,jindp | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c cawsmask.f -o cawsmask.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c esiglike.f -o esiglike.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c estimateComplexSigma.f -o estimateComplexSigma.o estimateComplexSigma.f:155:72: 155 | thnew(k,iind)=swjy(k,thrednr)/swj | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] estimateComplexSigma.f:32:33: 32 | 2 dlw12,n12,k,thrednr | ^ note: ‘thrednr’ was declared here gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c misc.f -o misc.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c nlmeans.f -o nlmeans.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c pcaws.f -o pcaws.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c segment.f -o segment.o gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c smooth3d.f -o smooth3d.o smooth3d.f:395:72: 395 | rthrednr = (thrednr-1)*n4 | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] smooth3d.f:357:34: 357 | 1 dlw1,dlw2,dlw3,k,n,thrednr,iind,jind,rthrednr,dlw12,jindp,iindp | ^ note: ‘thrednr’ was declared here smooth3d.f:572:72: 572 | thn(k,iindp)=swjy(k,thrednr)/swj | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] smooth3d.f:493:55: 493 | 1 clw1,clw2,clw3,dlw1,dlw2,dlw3,k,n,thrednr,iind,jind, | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c smse3.f -o smse3.o smse3.f:759:72: 759 | thn(iindp,i4) = swy(i4,thrednr)/sw(i4,thrednr) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] smse3.f:647:57: 647 | integer iind,jind,i,i1,i2,i3,i4,j1,j2,j3,j4,thrednr,k,n12, | ^ note: ‘thrednr’ was declared here smse3.f:999:72: 999 | z=(thi(k,thrednr)-th0(k,jindp)) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] smse3.f:818:52: 818 | integer iind,i,i1,i2,i3,i4,j1,j2,j3,j4,thrednr,k,jind,iind4, | ^ note: ‘thrednr’ was declared here smse3.f:616:72: 616 | z=swy(i4,thrednr)/sw(i4,thrednr) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] smse3.f:473:52: 473 | integer iind,i,i1,i2,i3,i4,j1,j2,j3,j4,thrednr, | ^ note: ‘thrednr’ was declared here gfortran-14 -fopenmp -fpic -g -O2 -Wall -mtune=native -c varest.f -o varest.o varest.f:234:72: 234 | 1 tol,maxit,work(1,thrednr),sgi,fmin,flb,nfb) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] varest.f:148:54: 148 | integer i1,i2,i3,j1,j2,j3,i,j,jj,n,maxit,thrednr | ^ note: ‘thrednr’ was declared here varest.f:472:72: 472 | wad(j,thrednr)=0.d0 | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] varest.f:446:45: 446 | integer i1,i2,i3,j1,j2,j3,i,j,n,thrednr | ^ note: ‘thrednr’ was declared here varest.f:103:72: 103 | yout(i1,i2,i3) = fmedian(work(1,thrednr),k) | ^ Warning: ‘thrednr’ may be used uninitialized [-Wmaybe-uninitialized] varest.f:75:43: 75 | integer i1,i2,i3,j1,j2,j3,j,k,thrednr | ^ note: ‘thrednr’ was declared here gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o aws.so ICIsmooth.o Rentries.o awslp.o awswghts.o caws.o cawsmask.o esiglike.o estimateComplexSigma.o init.o misc.o nlmeans.o pcaws.o segment.o smooth3d.o smse3.o varest.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcSNrQu/R.INSTALL10c8ef28c106e7/aws/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-aws/00new/aws/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aws) checking aws_2.5-6.tar.gz ... checking BBEST_0.1-8.tar.gz ... checking dti_1.5.4.3.tar.gz ... checking fmri_1.9.12.1.tar.gz ... checking qMRI_1.2.7.6.tar.gz ... Depends: Package: aws Depends: R (>= 3.4.0), awsMethods (>= 1.1-1) Imports: methods, gsl Timings: user system elapsed aws 64.265 5.267 69.56 Results: Check status summary: WARNING NOTE OK Source packages 0 0 1 Reverse depends 1 1 2 Check results summary: aws ... OK rdepends_BBEST ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_dti ... OK rdepends_fmri ... OK rdepends_qMRI ... WARNING * checking tests ... [20s/22s] NOTE * checking re-building of vignette outputs ... [4s/27s] WARNING Check results changes: Package: dti [Old version: 1.5.4, New version: 1.5.4.3] Check: Rd files Old result: NOTE New result: OK Package: qMRI Check: re-building of vignette outputs New result: WARNING Package: qMRI Check: tests New result: NOTE