* installing *source* package ‘automerge’ ... ** this is package ‘automerge’ version ‘0.2.0’ ** using staged installation Checking for system automerge installation... System automerge not found, building from bundled source... Building automerge-c... using Rust package manager: 'cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)' using Rust compiler: 'rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)' Extracting vendored Rust dependencies... -- The C compiler identification is Clang 21.1.8 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang-21 - skipped -- Detecting C compile features -- Detecting C compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build Building (this may take several minutes)... [ 12%] Producing the bindings' artifacts with Cargo... -- Touching "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/automerge-c/cbindgen.toml" if NOT_EXISTS "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/automerge.h"... -- Touched "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/automerge-c/cbindgen.toml". warning: profiles for the non root package will be ignored, specify profiles at the workspace root: package: /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/hexane/Cargo.toml workspace: /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/Cargo.toml Compiling proc-macro2 v1.0.105 Compiling quote v1.0.43 Compiling unicode-ident v1.0.22 Compiling serde_core v1.0.228 Compiling serde v1.0.228 Compiling libc v0.2.180 Compiling typenum v1.19.0 Compiling version_check v0.9.5 Compiling cfg-if v1.0.4 Compiling autocfg v1.5.0 Compiling rustix v1.1.3 Compiling getrandom v0.3.4 Compiling zmij v1.0.16 Compiling zerocopy v0.8.33 Compiling hashbrown v0.12.3 Compiling os_str_bytes v6.6.1 Compiling serde_json v1.0.149 Compiling bitflags v2.10.0 Compiling linux-raw-sys v0.11.0 Compiling syn v1.0.109 Compiling textwrap v0.16.2 Compiling fastrand v2.3.0 Compiling itoa v1.0.17 Compiling strsim v0.10.0 Compiling termcolor v1.4.1 Compiling bitflags v1.3.2 Compiling memchr v2.7.6 Compiling crc32fast v1.5.0 Compiling cbindgen v0.26.0 Compiling once_cell v1.21.3 Compiling thiserror v2.0.18 Compiling log v0.4.29 Compiling adler2 v2.0.1 Compiling simd-adler32 v0.3.8 Compiling clap_lex v0.2.4 Compiling heck v0.4.1 Compiling cpufeatures v0.2.17 Compiling leb128 v0.2.5 Compiling pin-project-lite v0.2.16 Compiling either v1.15.0 Compiling generic-array v0.14.7 Compiling tinyvec_macros v0.1.1 Compiling hex v0.4.3 Compiling rustc-hash v2.1.1 Compiling tinyvec v1.10.0 Compiling unicode-segmentation v1.12.0 Compiling miniz_oxide v0.8.9 Compiling indexmap v1.9.3 Compiling tracing-core v0.1.36 Compiling itertools v0.14.0 Compiling flate2 v1.1.8 Compiling syn v2.0.114 Compiling atty v0.2.14 Compiling clap v3.2.25 Compiling getrandom v0.2.17 Compiling block-buffer v0.10.4 Compiling crypto-common v0.1.7 Compiling digest v0.10.7 Compiling rand_core v0.6.4 Compiling sha2 v0.10.9 Compiling tempfile v3.24.0 Compiling ppv-lite86 v0.2.21 Compiling rand_chacha v0.3.1 Compiling rand v0.8.5 Compiling serde_derive v1.0.228 Compiling thiserror-impl v2.0.18 Compiling tracing-attributes v0.1.31 Compiling tracing v0.1.44 Compiling hexane v0.1.7 (/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/hexane) Compiling toml v0.5.11 Compiling smol_str v0.2.2 Compiling automerge v0.7.3 (/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/automerge) Compiling automerge-c v0.3.0 (/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/src/automerge/rust/automerge-c) Finished `release` profile [optimized] target(s) in 1m 16s -- Replacing "A_M([^_]+)_" with "AM_\1_" in "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/automerge.h"... -- Created/updated "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/automerge.h". -- Replacing "USIZE_" with "+8" in "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/automerge.h"... -- Created/updated "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/automerge.h". [ 12%] Built target automerge_core_artifacts [ 25%] Generating the enum string functions with CMake... -- Generating header file "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/include/automerge-c/utils/enum_string.h"... -- Generating source file "/srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/src/utils/enum_string.c"... [ 37%] Building C object CMakeFiles/automerge.dir/src/utils/result.c.o [ 50%] Building C object CMakeFiles/automerge.dir/src/utils/stack_callback_data.c.o [ 62%] Building C object CMakeFiles/automerge.dir/src/utils/stack.c.o [ 75%] Building C object CMakeFiles/automerge.dir/src/utils/string.c.o [ 87%] Building C object CMakeFiles/automerge.dir/src/utils/enum_string.c.o [100%] Linking C static library libautomerge.a Merging the libraries' constituent object files... Merging its dependent libraries into /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/libautomerge.a... /usr/bin/llvm-ar-21 -x /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00_pkg_src/automerge/build/Cargo/target/x86_64-unknown-linux-gnu/release/libautomerge_core.a /usr/bin/llvm-ar-21 -rs libautomerge.a objects/automerge_core/*.o [100%] Built target automerge [ 12%] Built target automerge_core_artifacts [100%] Built target automerge Install the project... -- Install configuration: "Release" Successfully built automerge-c from source Configuration: PKG_CFLAGS: -I../install/include PKG_LIBS: ../install/lib/libautomerge.a -pthread -ldl -lm -lrt ** libs using C compiler: ‘Debian clang version 21.1.8 (1+b1)’ clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c cursors.c -o cursors.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c document.c -o document.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c errors.c -o errors.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c memory.c -o memory.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c objects.c -o objects.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../install/include -fpic -g -O3 -Wall -pedantic -c sync.c -o sync.o clang-21 -std=gnu23 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o automerge.so cursors.o document.o errors.o init.o memory.o objects.o sync.o ../install/lib/libautomerge.a -pthread -ldl -lm -lrt -L/home/hornik/tmp/R-d-clang-21/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/automerge.Rcheck/00LOCK-automerge/00new/automerge/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automerge)