* using log directory 'd:/RCompile/CRANincoming/R-devel/atlasapprox.Rcheck'
* using R Under development (unstable) (2024-10-21 r87258 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'atlasapprox/DESCRIPTION' ... OK
* this is package 'atlasapprox' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Fabio Zanini <fabio.zanini@unsw.edu.au>'

New submission

Found the following (possibly) invalid URLs:
  URL: https://academic.oup.com/mbe/article/35/5/1047/4823215
    From: inst/doc/atlasapprox.html
    Status: 403
    Message: Forbidden
  URL: https://academic.oup.com/mbe/article/38/5/1888/6045962
    From: inst/doc/atlasapprox.html
    Status: 403
    Message: Forbidden
  URL: https://atlasapprox.readthedocs.io/R
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  URL: https://github.com/fabilab/atlasapprox
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  URL: https://github.com/fabilab/atlasapprox/issues
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  URL: https://www.cell.com/cell/pdf/S0092-8674(21)00493-1.pdf
    From: inst/doc/atlasapprox.html
    Status: 403
    Message: Forbidden
  URL: https://www.sciencedirect.com/science/article/pii/S0092867421004402
    From: inst/doc/atlasapprox.html
    Status: 403
    Message: Forbidden
  URL: https://www.sciencedirect.com/science/article/pii/S1534580722000338
    From: inst/doc/atlasapprox.html
    Status: 403
    Message: Forbidden
Please use DOIs for the following publisher URLs:
  https://academic.oup.com/mbe/article/35/5/1047/4823215
  https://academic.oup.com/mbe/article/38/5/1888/6045962
  https://www.sciencedirect.com/science/article/pii/S0092867421004402
  https://www.sciencedirect.com/science/article/pii/S1534580722000338

Found the following (possibly) invalid file URI:
  URI: ../index.html
    From: README.md

The Description field should not start with the package name,
  'This package' or similar.
The Description field contains
  https://atlasapprox.readthedocs.io.
Please enclose URLs in angle brackets (<...>).
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'atlasapprox' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    'Fabio Zanini <fabio.zanini@unsw.edu.au>'
  Authors@R: 'Fabio Zanini [aut, cre] (ORCID: <https://orcid.org/0000-0001-7097-8539>)'

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [14s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs