downloading reverse dependencies ‘canaper’, ‘data.validator’, ‘palaeoSig’, ‘verdata’, ‘ct’, ‘libbib’ trying URL 'file:///data/Repositories/CRAN/src/contrib/canaper_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/data.validator_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/palaeoSig_2.1-5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/verdata_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ct_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/libbib_1.6.4.tar.gz' installing dependencies ‘activity’, ‘analogue’, ‘assertr’, ‘camtrapdp’, ‘colorBlindness’, ‘Distance’, ‘fixtuRes’, ‘iNEXT’, ‘LCMCR’, ‘MCMCvis’, ‘overlap’, ‘phyloregion’, ‘rioja’, ‘sbd’, ‘shiny.semantic’ Warning: package ‘fixtuRes’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘emld’, ‘maptpx’, ‘semantic.assets’, ‘EML’, ‘frictionless’, ‘mrds’ begin installing package ‘emld’ begin installing package ‘maptpx’ begin installing package ‘frictionless’ begin installing package ‘semantic.assets’ begin installing package ‘mrds’ begin installing package ‘assertr’ begin installing package ‘colorBlindness’ begin installing package ‘rioja’ begin installing package ‘LCMCR’ begin installing package ‘analogue’ begin installing package ‘overlap’ begin installing package ‘activity’ begin installing package ‘sbd’ begin installing package ‘iNEXT’ begin installing package ‘MCMCvis’ * installing *source* package ‘activity’ ... ** this is package ‘activity’ version ‘1.3.4’ ** package ‘activity’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (activity) * installing *source* package ‘assertr’ ... ** this is package ‘assertr’ version ‘3.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (assertr) * installing *source* package ‘semantic.assets’ ... ** this is package ‘semantic.assets’ version ‘1.1.0’ ** package ‘semantic.assets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (semantic.assets) begin installing package ‘shiny.semantic’ * installing *source* package ‘sbd’ ... ** this is package ‘sbd’ version ‘0.1.0’ ** package ‘sbd’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sbd) * installing *source* package ‘maptpx’ ... ** this is package ‘maptpx’ version ‘1.9-7’ ** package ‘maptpx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9TWIyb/R.INSTALL3f0806c9f0b1f/maptpx/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c latools.c -o latools.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c topics.c -o topics.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o maptpx.so init.o latools.o rhelp.o topics.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9TWIyb/R.INSTALL3f0806c9f0b1f/maptpx/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-maptpx/00new/maptpx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maptpx) begin installing package ‘phyloregion’ * installing *source* package ‘emld’ ... ** this is package ‘emld’ version ‘0.5.3’ ** package ‘emld’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (emld) begin installing package ‘EML’ * installing *source* package ‘frictionless’ ... ** this is package ‘frictionless’ version ‘2.0.1’ ** package ‘frictionless’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frictionless) * installing *source* package ‘overlap’ ... ** this is package ‘overlap’ version ‘0.3.9’ ** package ‘overlap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3BMmYd/R.INSTALL3f09a26a53a4c/overlap/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c densRad.c -o densRad.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o overlap.so densRad.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3BMmYd/R.INSTALL3f09a26a53a4c/overlap/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-overlap/00new/overlap/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (overlap) * installing *source* package ‘MCMCvis’ ... ** this is package ‘MCMCvis’ version ‘0.16.5’ ** package ‘MCMCvis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MCMCvis) * installing *source* package ‘colorBlindness’ ... ** this is package ‘colorBlindness’ version ‘0.1.9’ ** package ‘colorBlindness’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (colorBlindness) * installing *source* package ‘shiny.semantic’ ... ** this is package ‘shiny.semantic’ version ‘0.5.1’ ** package ‘shiny.semantic’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.semantic) * installing *source* package ‘EML’ ... ** this is package ‘EML’ version ‘2.0.7’ ** package ‘EML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EML) begin installing package ‘camtrapdp’ * installing *source* package ‘analogue’ ... ** this is package ‘analogue’ version ‘0.18.1’ ** package ‘analogue’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxWucA2/R.INSTALL3f0948f6376a/analogue/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distx.c -o distx.o distx.c: In function ‘xx_chi_distance’: distx.c:234:23: warning: variable ‘nomin’ set but not used [-Wunused-but-set-variable=] 234 | double dist, dev, nomin; | ^~~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distxy.c -o distxy.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wastats.c -o wastats.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o analogue.so distx.o distxy.o init.o wastats.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxWucA2/R.INSTALL3f0948f6376a/analogue/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-analogue/00new/analogue/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (analogue) * installing *source* package ‘camtrapdp’ ... ** this is package ‘camtrapdp’ version ‘0.6.1’ ** package ‘camtrapdp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (camtrapdp) * installing *source* package ‘rioja’ ... ** this is package ‘rioja’ version ‘1.0-7’ ** package ‘rioja’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-4) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE47glZ/R.INSTALL3f08611ebeb60/rioja/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c analog.c -o analog.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c chclust.cpp -o chclust.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dmatinv.cpp -o dmatinv.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mat.cpp -o mat.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mlrc.cpp -o mlrc.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils2.c -o utils2.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c wapls.cpp -o wapls.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rioja.so analog.o chclust.o dmatinv.o init.o mat.o mlrc.o utils2.o wapls.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE47glZ/R.INSTALL3f08611ebeb60/rioja/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rioja/00new/rioja/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rioja) * installing *source* package ‘mrds’ ... ** this is package ‘mrds’ version ‘3.0.1’ ** package ‘mrds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mrds) begin installing package ‘Distance’ * installing *source* package ‘iNEXT’ ... ** this is package ‘iNEXT’ version ‘3.0.2’ ** package ‘iNEXT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpm2u9Uv/R.INSTALL3f098cd9c6d/iNEXT/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c subfuns.cpp -o subfuns.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o iNEXT.so RcppExports.o subfuns.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpm2u9Uv/R.INSTALL3f098cd9c6d/iNEXT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-iNEXT/00new/iNEXT/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iNEXT) * installing *source* package ‘LCMCR’ ... ** this is package ‘LCMCR’ version ‘0.4.14’ ** package ‘LCMCR’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-16 accepts -g... yes checking for gcc-16 option to enable C11 features... none needed checking for gsl-config... /usr/bin/gsl-config checking for GSL - version >= 2.5... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-4) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpE3cDYl/R.INSTALL3f0915d1bea19/LCMCR/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/registration.cpp -o R_Interface/registration.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/R_Lcm_CR.cpp -o R_Interface/R_Lcm_CR.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c NPLCM_CR_Basic_Freq.cpp -o NPLCM_CR_Basic_Freq.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/R_Environ_Simple.cpp -o daniel2/R_Environ_Simple.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CChain.cpp -o daniel2/CChain.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam.cpp -o daniel2/CParam.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CData.cpp -o daniel2/CData.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam_generic.cpp -o daniel2/CParam_generic.o daniel2/CParam_generic.cpp:55: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas] 55 | #pragma omp critical g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CVariable_Container.cpp -o daniel2/CVariable_Container.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/dan_array_utils.cpp -o daniel2/dan_array_utils.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o LCMCR.so R_Interface/registration.o R_Interface/R_Lcm_CR.o ./NPLCM_CR_Basic_Freq.o daniel2/R_Environ_Simple.o daniel2/CChain.o daniel2/CParam.o daniel2/CData.o daniel2/CParam_generic.o daniel2/CVariable_Container.o daniel2/dan_array_utils.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpE3cDYl/R.INSTALL3f0915d1bea19/LCMCR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LCMCR/00new/LCMCR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LCMCR) * installing *source* package ‘Distance’ ... ** this is package ‘Distance’ version ‘2.0.1’ ** package ‘Distance’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Distance) * installing *source* package ‘phyloregion’ ... ** this is package ‘phyloregion’ version ‘1.0.9’ ** package ‘phyloregion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phyloregion) checking assertr_3.1.0.tar.gz ... checking canaper_1.0.1.tar.gz ... checking data.validator_0.2.1.tar.gz ... checking palaeoSig_2.1-5.tar.gz ... checking verdata_1.0.2.tar.gz ... checking ct_0.5.0.tar.gz ... checking libbib_1.6.4.tar.gz ... Depends: Package: assertr Depends: R (>= 4.0.0) Imports: dplyr (>= 0.7.0), MASS, methods, stats, utils, rlang (>= 0.3.0) Timings: user system elapsed assertr 33.564 4.345 39.005 Results: Check status summary: OK Source packages 1 Reverse depends 6 Check results summary: assertr ... OK rdepends_canaper ... OK rdepends_ct ... OK rdepends_data.validator ... OK rdepends_libbib ... OK rdepends_palaeoSig ... OK rdepends_verdata ... OK