downloading reverse dependencies ‘arc’, ‘arlclustering’, ‘arulesCBA’, ‘arulesNBMiner’, ‘arulesSequences’, ‘arulesViz’, ‘clickstream’, ‘CLONETv2’, ‘CRE’, ‘daltoolbox’, ‘discnorm’, ‘fdm2id’, ‘GroupBN’, ‘ibmdbR’, ‘icdhelper’, ‘opusminer’, ‘pervasive’, ‘qCBA’, ‘RareComb’, ‘rCBA’, ‘recommenderlab’, ‘rgnoisefilt’, ‘RulesTools’, ‘sbrl’, ‘TELP’, ‘ctsem’, ‘fcaR’, ‘gp3sequences’, ‘manydist’, ‘nuggets’, ‘pmml’, ‘rattle’, ‘SurvivalTests’, ‘tidylearn’ trying URL 'file:///data/Repositories/CRAN/src/contrib/arc_1.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arlclustering_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arulesCBA_1.2.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arulesNBMiner_0.1.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arulesSequences_0.2-32.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/arulesViz_1.5.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/clickstream_1.3.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CLONETv2_2.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CRE_0.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/daltoolbox_1.3.787.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/discnorm_0.2.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fdm2id_1.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/GroupBN_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ibmdbR_1.51.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/icdhelper_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/opusminer_0.1-1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pervasive_1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/qCBA_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RareComb_1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rCBA_0.4.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/recommenderlab_1.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rgnoisefilt_1.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RulesTools_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sbrl_1.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TELP_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ctsem_3.11.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fcaR_2.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gp3sequences_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/manydist_0.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/nuggets_2.2.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/pmml_2.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rattle_5.6.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SurvivalTests_1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidylearn_0.5.0.tar.gz' installing dependencies ‘ada’, ‘arc’, ‘arules’, ‘arulesCBA’, ‘arulesSequences’, ‘arulesViz’, ‘bartCause’, ‘cba’, ‘ClickClust’, ‘ClustOfVar’, ‘cOde’, ‘descr’, ‘diagis’, ‘discretization’, ‘distances’, ‘eulerr’, ‘fractional’, ‘GoFKernel’, ‘GrpString’, ‘ibr’, ‘kdml’, ‘meanShiftR’, ‘mize’, ‘papaja’, ‘pmml’, ‘qCBA’, ‘rattle’, ‘rCBA’, ‘recosystem’, ‘RRF’, ‘sbrl’, ‘seqHMM’, ‘SparkR’, ‘survival’, ‘TunePareto’, ‘weibullness’ Warning: package ‘SparkR’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘dbarts’, ‘tinylabels’, ‘rmdfiltr’, ‘ggseqplot’, ‘RcppHungarian’ begin installing package ‘tinylabels’ begin installing package ‘dbarts’ begin installing package ‘rmdfiltr’ begin installing package ‘ggseqplot’ begin installing package ‘RcppHungarian’ begin installing package ‘pmml’ begin installing package ‘discretization’ begin installing package ‘ClickClust’ begin installing package ‘GoFKernel’ begin installing package ‘RRF’ begin installing package ‘ibr’ begin installing package ‘meanShiftR’ begin installing package ‘ClustOfVar’ begin installing package ‘TunePareto’ begin installing package ‘recosystem’ begin installing package ‘eulerr’ begin installing package ‘cOde’ begin installing package ‘mize’ begin installing package ‘diagis’ begin installing package ‘fractional’ begin installing package ‘GrpString’ begin installing package ‘distances’ begin installing package ‘survival’ begin installing package ‘ada’ begin installing package ‘rattle’ begin installing package ‘cba’ begin installing package ‘descr’ begin installing package ‘weibullness’ * installing *source* package ‘rmdfiltr’ ... ** this is package ‘rmdfiltr’ version ‘0.1.5’ ** package ‘rmdfiltr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdfiltr) begin installing package ‘arules’ * installing *source* package ‘GoFKernel’ ... ** this is package ‘GoFKernel’ version ‘2.1-3’ ** package ‘GoFKernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GoFKernel) * installing *source* package ‘discretization’ ... ** this is package ‘discretization’ version ‘1.0-1.1’ ** package ‘discretization’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (discretization) * installing *source* package ‘GrpString’ ... ** this is package ‘GrpString’ version ‘0.5.1’ ** package ‘GrpString’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GrpString) * installing *source* package ‘tinylabels’ ... ** this is package ‘tinylabels’ version ‘0.2.5’ ** package ‘tinylabels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinylabels) begin installing package ‘papaja’ * installing *source* package ‘ada’ ... ** this is package ‘ada’ version ‘2.0-5.1’ ** package ‘ada’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ada) * installing *source* package ‘ClustOfVar’ ... ** this is package ‘ClustOfVar’ version ‘1.2’ ** package ‘ClustOfVar’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClustOfVar) * installing *source* package ‘meanShiftR’ ... ** this is package ‘meanShiftR’ version ‘0.56’ ** package ‘meanShiftR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmppevWFe/R.INSTALL15d7fc33dc4825/meanShiftR/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kdtree.c -o kdtree.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c meanShift.c -o meanShift.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c median.c -o median.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o meanShiftR.so init.o kdtree.o meanShift.o median.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppevWFe/R.INSTALL15d7fc33dc4825/meanShiftR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-meanShiftR/00new/meanShiftR/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (meanShiftR) * installing *source* package ‘cOde’ ... ** this is package ‘cOde’ version ‘1.1.1’ ** package ‘cOde’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cOde) * installing *source* package ‘descr’ ... ** this is package ‘descr’ version ‘1.1.9’ ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1fMSQc/R.INSTALL15d83343d54d4e/descr/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1fMSQc/R.INSTALL15d83343d54d4e/descr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) * installing *source* package ‘TunePareto’ ... ** this is package ‘TunePareto’ version ‘2.5.3’ ** package ‘TunePareto’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVh30Du/R.INSTALL15d818366c4131/TunePareto/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c TunePareto.c -o TunePareto.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c TunePareto_init.c -o TunePareto_init.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o TunePareto.so TunePareto.o TunePareto_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVh30Du/R.INSTALL15d818366c4131/TunePareto/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-TunePareto/00new/TunePareto/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TunePareto) * installing *source* package ‘ClickClust’ ... ** this is package ‘ClickClust’ version ‘1.1.6’ ** package ‘ClickClust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSh0CUu/R.INSTALL15d7e7438d73cb/ClickClust/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libClickClust.c -o libClickClust.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libEM.c -o libEM.o libEM.c: In function ‘EM’: libEM.c:226:13: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 226 | int step, i, k, M; | ^~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libEM_.c -o libEM_.o libEM_.c: In function ‘EM_’: libEM_.c:279:13: warning: variable ‘step’ set but not used [-Wunused-but-set-variable=] 279 | int step, i, k, M; | ^~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libOther.c -o libOther.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libRandC.c -o libRandC.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ClickClust.so libClickClust.o libEM.o libEM_.o libOther.o libRandC.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSh0CUu/R.INSTALL15d7e7438d73cb/ClickClust/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ClickClust/00new/ClickClust/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClickClust) * installing *source* package ‘mize’ ... ** this is package ‘mize’ version ‘0.2.5’ ** package ‘mize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mize) * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6N9PLL/R.INSTALL15d7fe716a95fd/RRF/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘regTree’: regTree.c:37:15: warning: variable ‘ss’ set but not used [-Wunused-but-set-variable=] 37 | double d, ss, av, decsplit, ubest, sumnode; | ^~ regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable=] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable=] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable=] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable=] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable=] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:288:41: warning: ‘nstrata’ may be used uninitialized [-Wmaybe-uninitialized] 288 | zeroInt(strata_size, nstrata); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:93:20: note: ‘nstrata’ was declared here 93 | keepInbag, nstrata; | ^~~~~~~ rf.c:291:59: warning: ‘strata_idx’ may be used uninitialized [-Wmaybe-uninitialized] 291 | strata_idx[strata[j] - 1][strata_size[strata[j] - 1] - 1] = j; | ^ rf.c:103:11: note: ‘strata_idx’ was declared here 103 | int **strata_idx, *strata_size, last, ktmp, anyEmpty, ntry; | ^~~~~~~~~~ rf.c:288:41: warning: ‘strata_size’ may be used uninitialized [-Wmaybe-uninitialized] 288 | zeroInt(strata_size, nstrata); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:103:24: note: ‘strata_size’ was declared here 103 | int **strata_idx, *strata_size, last, ktmp, anyEmpty, ntry; | ^~~~~~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-16 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6N9PLL/R.INSTALL15d7fe716a95fd/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) * installing *source* package ‘cba’ ... ** this is package ‘cba’ version ‘0.2-25’ ** package ‘cba’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPHeLK/R.INSTALL15d83673a2ebd5/cba/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c arrayIndex.c -o arrayIndex.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ccfkms.c -o ccfkms.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cluster.c -o cluster.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coding.c -o coding.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dll.c -o dll.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gknn.c -o gknn.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c greedy.c -o greedy.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interpolate.c -o interpolate.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c optimal.c -o optimal.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c proximus.c -o proximus.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rock.c -o rock.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sdists.c -o sdists.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stress.c -o stress.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cba.so arrayIndex.o ccfkms.o cluster.o coding.o dll.o gknn.o greedy.o interpolate.o optimal.o proximus.o rock.o sdists.o stress.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPHeLK/R.INSTALL15d83673a2ebd5/cba/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cba/00new/cba/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cba) * installing *source* package ‘pmml’ ... ** this is package ‘pmml’ version ‘2.6.1’ ** package ‘pmml’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmml) * installing *source* package ‘ibr’ ... ** this is package ‘ibr’ version ‘2.4-2’ ** package ‘ibr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3Gc9h7/R.INSTALL15d8082b7b84e2/ibr/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dssplines.c -o dssplines.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ibr.c -o ibr.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kernel.c -o kernel.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polynomlocaux.c -o polynomlocaux.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c product.c -o product.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regression.c -o regression.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smoother.c -o smoother.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ibr.so dssplines.o ibr.o init.o kernel.o polynomlocaux.o product.o regression.o smoother.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3Gc9h7/R.INSTALL15d8082b7b84e2/ibr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ibr/00new/ibr/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ibr) * installing *source* package ‘RcppHungarian’ ... ** this is package ‘RcppHungarian’ version ‘0.3’ ** package ‘RcppHungarian’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpog9WIG/R.INSTALL15d7d2223d0b1a/RcppHungarian/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include/ -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ../inst/include/RcppHungarian.h: In member function ‘void HungarianAlgorithm::assignmentoptimal(int*, double*, double*, int, int)’: ../inst/include/RcppHungarian.h:169:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 169 | if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON) | ^~ ../inst/include/RcppHungarian.h:177:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 177 | for (row = 0; row::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for (int i=0; i&, size_t, size_t, int)’: rulelib.cpp:122:31: warning: comparison of integer expressions of different signedness: ‘const size_t’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 122 | if (nsamples_expected != sample_cnt) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ rulelib.cpp: In static member function ‘static Ruleset Ruleset::ruleset_init(int, const std::vector&, std::vector&)’: rulelib.cpp:318:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 318 | for (int i = 0; i < idarray.size(); i++) { | ~~^~~~~~~~~~~~~~~~ rulelib.cpp: In member function ‘int Ruleset::pick_random_rule(int, gsl_rng*) const’: rulelib.cpp:524:35: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘int’ [-Wsign-compare] 524 | if (entry.rule_id == new_rule) { | ~~~~~~~~~~~~~~^~~~~~~~~~~ rulelib.cpp: In member function ‘void Ruleset::ruleset_swap_any(int, int, std::vector&)’: rulelib.cpp:582:18: warning: variable ‘cnt_check’ set but not used [-Wunused-but-set-variable=] 582 | int cnt, cnt_check, k, temp; | ^~~~~~~~~ rulelib.cpp: In function ‘int count_ones(v_entry)’: rulelib.cpp:728:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 728 | for (i = 0; i < sizeof(v_entry); i++) { | ~~^~~~~~~~~~~~~~~~~ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -DGMP -I/usr/local/include -I/usr/include -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DGMP -g -O2 -Wall -pedantic -mtune=native -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c train.cpp -o train.o train.cpp: In function ‘void propose(Ruleset&, std::vector&, std::vector&, int, double&, double&, double, int&, double&, const Params&, gsl_rng*, int (*)(double, double, double, double, double&, gsl_rng*))’: train.cpp:150:45: warning: ‘change_ndx’ may be used uninitialized [-Wmaybe-uninitialized] 150 | new_log_post = compute_log_posterior(rs_new, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 151 | rules, nrules, labels, params, 0, change_ndx, prefix_bound); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ train.cpp:116:13: note: ‘change_ndx’ was declared here 116 | int change_ndx, ndx1, ndx2; | ^~~~~~~~~~ g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sbrl.so rcpp_module.o rulelib.o train.o -Wl,-O1 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -lgmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCijlvI/R.INSTALL15e8aa535a8574/sbrl/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sbrl/00new/sbrl/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sbrl) * installing *source* package ‘recosystem’ ... ** this is package ‘recosystem’ version ‘0.5.1’ ** package ‘recosystem’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHgZSuI/R.INSTALL15d80f29a39141/recosystem/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mf.cpp -o mf.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reco-output.cpp -o reco-output.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reco-predict.cpp -o reco-predict.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reco-read-data.cpp -o reco-read-data.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reco-train.cpp -o reco-train.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reco-tune.cpp -o reco-tune.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register_routines.c -o register_routines.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o recosystem.so mf.o reco-output.o reco-predict.o reco-read-data.o reco-train.o reco-tune.o register_routines.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHgZSuI/R.INSTALL15d80f29a39141/recosystem/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-recosystem/00new/recosystem/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (recosystem) * installing *source* package ‘dbarts’ ... ** this is package ‘dbarts’ version ‘0.9-34’ ** package ‘dbarts’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-16 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-16 accepts -g... yes checking for gcc-16 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-16 -E checking whether the compiler supports GNU C++... yes checking whether g++-16 -std=gnu++20 accepts -g... yes checking for g++-16 -std=gnu++20 option to enable C++11 features... -std=gnu++11 checking how to run the C++ preprocessor... g++-16 -std=gnu++20 -std=gnu++11 -E checking for C/C++ restrict keyword... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for C compiler vendor... gnu checking whether C compiler accepts ... yes checking whether C compiler accepts -msse2... yes checking whether C compiler accepts -msse4.1... yes checking whether C compiler accepts -mavx... yes checking whether C compiler accepts -mavx2... yes checking for a sed that does not truncate output... /usr/bin/sed checking for egrep -e... /usr/bin/grep -E checking whether gcc-16 is Clang... no checking whether pthreads work with "-pthread" and "-lpthread"... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking for cstdint... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for malloc.h... yes checking for int64_t... yes checking for uint64_t... yes checking size of size_t... 8 checking alignment of void*... 8 checking for gettimeofday... yes checking for clock_gettime... yes checking for ffs... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for g++-16 -std=gnu++20 -std=gnu++11 options needed to detect all undeclared functions... none needed checking whether strerror_r is declared... yes checking whether strerror_r returns char *... yes checking for snprintf... yes checking if g++ supports namespace std... yes checking whether snprintf is in std::... yes checking for log1p... yes checking whether log1p is in std::... no configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.hpp config.status: creating src/dbarts/config.hpp config.status: creating src/misc/config.h config.status: creating src/external/config.h config.status: creating inst/include/dbarts/types.hpp config.status: creating src/include/misc/types.h ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_C_interface.cpp -o R_C_interface.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface.cpp -o R_interface.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_common.cpp -o R_interface_common.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_crossvalidate.cpp -o R_interface_crossvalidate.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_rbart.cpp -o R_interface_rbart.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c R_interface_sampler.cpp -o R_interface_sampler.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c crossvalidate.cpp -o crossvalidate.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c guessNumCores.cpp -o guessNumCores.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -Iinclude -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c makeModelMatrixFromDataFrame.c -o makeModelMatrixFromDataFrame.o make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/dbarts' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c bartFit.cpp -o bartFit.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c binaryIO.cpp -o binaryIO.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c birthDeathRule.cpp -o birthDeathRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c changeRule.cpp -o changeRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c functions.cpp -o functions.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c likelihood.cpp -o likelihood.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c node.cpp -o node.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c parameterPrior.cpp -o parameterPrior.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c state.cpp -o state.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c swapRule.cpp -o swapRule.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c tree.cpp -o tree.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../../inst/include -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -fpic -c treePrior.cpp -o treePrior.o ar -rv ../dbarts.a bartFit.o binaryIO.o birthDeathRule.o changeRule.o functions.o likelihood.o node.o parameterPrior.o state.o swapRule.o tree.o treePrior.o ar: creating ../dbarts.a a - bartFit.o a - binaryIO.o a - birthDeathRule.o a - changeRule.o a - functions.o a - likelihood.o a - node.o a - parameterPrior.o a - state.o a - swapRule.o a - tree.o a - treePrior.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/dbarts' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/external' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c io.c -o io.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c randomBase.c -o randomBase.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c randomNorm.c -o randomNorm.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c random.c -o random.o ar -rv ../external.a io.o randomBase.o randomNorm.o random.o ar: creating ../external.a a - io.o a - randomBase.o a - randomNorm.o a - random.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/external' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/misc' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -msse2 -c adaptiveRadixTree.c -o adaptiveRadixTree.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c binaryIO.c -o binaryIO.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c blockingThreadManager.c -o blockingThreadManager.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c hierarchicalThreadManager.c -o hierarchicalThreadManager.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra.c -o linearAlgebra.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments.c -o moments.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition.c -o partition.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c simd.c -o simd.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c string.c -o string.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c thread.c -o thread.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_sse2.c -o linearAlgebra_sse2.c gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_sse2.c -o linearAlgebra_sse2.c echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments_sse2.c -o moments_sse2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c moments_sse2.c -o moments_sse2.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse2.c -o partition_sse2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse2.c -o partition_sse2.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse4_1.c -o partition_sse4_1.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_sse4_1.c -o partition_sse4_1.o echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_avx.c -o linearAlgebra_avx.c gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c linearAlgebra_avx.c -o linearAlgebra_avx.c echo gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_avx2.c -o partition_avx2.o gcc-16 -I/home/hornik/tmp/R/include -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c partition_avx2.c -o partition_avx2.o ar -rv ../misc.a adaptiveRadixTree.o binaryIO.o blockingThreadManager.o hierarchicalThreadManager.o linearAlgebra.o moments.o partition.o simd.o string.o thread.o linearAlgebra_sse2.o moments_sse2.o partition_sse2.o partition_sse4_1.o linearAlgebra_avx.o partition_avx2.o ar: creating ../misc.a a - adaptiveRadixTree.o a - binaryIO.o a - blockingThreadManager.o a - hierarchicalThreadManager.o a - linearAlgebra.o a - moments.o a - partition.o a - simd.o a - string.o a - thread.o a - linearAlgebra_sse2.o a - moments_sse2.o a - partition_sse2.o a - partition_sse4_1.o a - linearAlgebra_avx.o a - partition_avx2.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/misc' make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/rc' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c bounds.c -o bounds.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../include -pthread -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -c util.c -o util.o ar -rv ../rc.a bounds.o util.o ar: creating ../rc.a a - bounds.o a - util.o make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src/rc' g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dbarts.so R_C_interface.o R_interface.o R_interface_common.o R_interface_crossvalidate.o R_interface_rbart.o R_interface_sampler.o crossvalidate.o guessNumCores.o makeModelMatrixFromDataFrame.o dbarts.a external.a misc.a rc.a -pthread -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpasGBiM/R.INSTALL15d7d512405745/dbarts/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dbarts/00new/dbarts/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dbarts) begin installing package ‘bartCause’ * installing *source* package ‘survival’ ... ** this is package ‘survival’ version ‘3.8-12’ ** package ‘survival’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeHRX7z/R.INSTALL15d831cadd4c9/survival/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agexact.c -o agexact.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agfit4.c -o agfit4.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agfit5.c -o agfit5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agmart.c -o agmart.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agmart3.c -o agmart3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agscore2.c -o agscore2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agscore3.c -o agscore3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agsurv4.c -o agsurv4.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c agsurv5.c -o agsurv5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cdecomp.c -o cdecomp.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv2.c -o chinv2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chinv3.c -o chinv3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky2.c -o cholesky2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky3.c -o cholesky3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cholesky5.c -o cholesky5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve2.c -o chsolve2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve3.c -o chsolve3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chsolve5.c -o chsolve5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c collapse.c -o collapse.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance1.c -o concordance1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance3.c -o concordance3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance5.c -o concordance5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cox_Rcallback.c -o cox_Rcallback.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxcount1.c -o coxcount1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxdetail.c -o coxdetail.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxexact.c -o coxexact.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxfit5.c -o coxfit5.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxfit6.c -o coxfit6.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxmart.c -o coxmart.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxmart2.c -o coxmart2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxph_wtest.c -o coxph_wtest.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxsafe.c -o coxsafe.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxscho.c -o coxscho.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxscore2.c -o coxscore2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxsurv1.c -o coxsurv1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxsurv2.c -o coxsurv2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxsurv3.c -o coxsurv3.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coxsurv4.c -o coxsurv4.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatrix.c -o dmatrix.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c doloop.c -o doloop.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fastkm.c -o fastkm.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c finegray.c -o finegray.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gchol.c -o gchol.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c multicheck.c -o multicheck.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c norisk.c -o norisk.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pyears1.c -o pyears1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pyears2.c -o pyears2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pyears3b.c -o pyears3b.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pystep.c -o pystep.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c residcsum.c -o residcsum.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survConcordance.c -o survConcordance.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survdiff2.c -o survdiff2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survfit4.c -o survfit4.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survfitaj.c -o survfitaj.o survfitaj.c: In function ‘survfitaj’: survfitaj.c:510:21: warning: ‘stdp’ may be used uninitialized [-Wmaybe-uninitialized] 510 | stdp[j][i] = se1[j]; | ~~~~^~~ survfitaj.c:96:14: note: ‘stdp’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ survfitaj.c:517:32: warning: ‘stdc’ may be used uninitialized [-Wmaybe-uninitialized] 517 | if (sefit > 0) stdc[jk][i] = se2[jk]; | ~~~~^~~~ survfitaj.c:96:23: note: ‘stdc’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ survfitaj.c:511:21: warning: ‘stda’ may be used uninitialized [-Wmaybe-uninitialized] 511 | stda[j][i] = se3[j]; | ~~~~^~~ survfitaj.c:96:31: note: ‘stda’ was declared here 96 | double **stdp, **stdc, **stda; | ^~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survfitkm.c -o survfitkm.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survfitresid.c -o survfitresid.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survpenal.c -o survpenal.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survreg6.c -o survreg6.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survreg7.c -o survreg7.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survregc1.c -o survregc1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survregc2.c -o survregc2.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survsplit.c -o survsplit.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tmerge.c -o tmerge.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c twoclust.c -o twoclust.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zph1.c -o zph1.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zph2.c -o zph2.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeHRX7z/R.INSTALL15d831cadd4c9/survival/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survival/00new/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survival) begin installing package ‘kdml’ begin installing package ‘arulesCBA’ * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-10’ ** package ‘bartCause’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) * installing *source* package ‘arulesSequences’ ... ** this is package ‘arulesSequences’ version ‘0.2-32’ ** package ‘arulesSequences’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c arrayIndex.c -o arrayIndex.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dll.c -o dll.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c idlists.c -o idlists.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c makebin.c -o makebin.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ported.c -o ported.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ptree.c -o ptree.o ptree.c: In function ‘eballoc’: ptree.c:208:12: warning: pointer ‘q’ may be used after ‘realloc’ [-Wuse-after-free=] 208 | eb = q; | ~~~^~~ ptree.c:206:10: note: call to ‘realloc’ here 206 | eb = realloc(q, sizeof(int) * ne); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c similarity.c -o similarity.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o arulesSequences.so arrayIndex.o dll.o idlists.o makebin.o matrix.o ported.o ptree.o similarity.o -L/home/hornik/tmp/R/lib -lR ## binaries ( cd TPOSE; \ make CXX="g++-16 -std=gnu++20" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native "\ LDFLAGS="-Wl,-O1"\ BINDIR="inst/bin"\ install-bin \ ) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src/TPOSE' g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c -o calcdb.o calcdb.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c -o Array.o Array.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -Wl,-O1 -o exttpose exttpose.cc calcdb.o Array.o -lm exttpose.cc: In function ‘void parse_args(int, char**)’: exttpose.cc:134:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 134 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){ exttpose.cc:138:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 138 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){ exttpose.cc:142:51: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 142 | if (read(c,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ exttpose.cc:146:52: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 146 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ exttpose.cc:150:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 150 | if (read(c,(char *)&DBASE_TOT_TRANS,ITSZ) < ITSZ){ exttpose.cc:158:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 158 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){ exttpose.cc:162:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 162 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){ exttpose.cc:166:52: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ exttpose.cc: In function ‘void process_cust(int*, int, int, int*, Array**, CHAR*, CHAR*, char*, int*, int, int)’: exttpose.cc:438:69: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 438 | if (write(seqfd, (char *)&backidx[fidx[k]], ITSZ) < ITSZ){ exttpose.cc:442:69: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 442 | if (write(seqfd, (char *)&backidx[fidx[j]], ITSZ) < ITSZ){ exttpose.cc:461:66: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 461 | if (write(isetfd, (char *)&backidx[ii1], ITSZ) < ITSZ) exttpose.cc:463:66: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 463 | if (write(isetfd, (char *)&backidx[ii2], ITSZ) < ITSZ) exttpose.cc:474:72: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 474 | if (write(seqfd, (char *)&backidx[fidx[j]], ITSZ) < ITSZ) exttpose.cc:476:72: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 476 | if (write(seqfd, (char *)&backidx[fidx[k]], ITSZ) < ITSZ) exttpose.cc: In function ‘void tpose()’: exttpose.cc:868:72: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 868 | if (write(isetfd, (char *)&buf[j], ITSZ) < ITSZ){ exttpose.cc:872:72: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 872 | if (write(isetfd, (char *)&buf[l], ITSZ) < ITSZ){ g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -Wl,-O1 -o getconf getconf.cc calcdb.o -lm getconf.cc: In function ‘int main(int, char**)’: getconf.cc:122:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 122 | if (write(conffd,(char *)&DBASE_NUM_CUST,ITSZ) < ITSZ){ | ^ getconf.cc:126:53: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 126 | if (write(conffd,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){ | ^ getconf.cc:130:57: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 130 | if (write(conffd,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ getconf.cc:134:58: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | if (write(conffd,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ getconf.cc:138:55: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 138 | if (write(conffd,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){ | ^ getconf.cc:142:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 142 | if (write(conffd,(char *)&DBASE_MINTRANS,ITSZ) < ITSZ){ | ^ getconf.cc:146:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 146 | if (write(conffd,(char *)&DBASE_MAXTRANS,ITSZ) < ITSZ){ | ^ getconf.cc:153:55: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 153 | if (write(conffd,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){ | ^ getconf.cc:157:53: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 157 | if (write(conffd,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){ | ^ getconf.cc:161:58: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 161 | if (write(conffd,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ getconf.cc:165:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 165 | if (write(conffd,(char *)&DBASE_MINTRANS,ITSZ) < ITSZ){ | ^ getconf.cc:169:54: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 169 | if (write(conffd,(char *)&DBASE_MAXTRANS,ITSZ) < ITSZ){ | ^ g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -Wl,-O1 -o makebin makebin.cc mkdir -p ../../inst/bin cp exttpose getconf makebin ../../inst/bin make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src/TPOSE' ( cd cSPADE; \ make CXX="g++-16 -std=gnu++20" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native "\ LDFLAGS="-Wl,-O1"\ BINDIR="inst/bin"\ install-bin \ ) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src/cSPADE' g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c Itemset.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c Array.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c Eqclass.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c Lists.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c extl2.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c partition.cc partition.cc: In function ‘void partition_get_minmaxcustid(int*, int, int, int&, int&)’: partition.cc:171:56: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 171 | if (read(DATAFD[pnum], (char *)&custid, ITSZ) < ITSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ partition.cc:177:56: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 177 | if (read(DATAFD[pnum], (char *)&custid, ITSZ) < ITSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -c maxgap.cc g++-16 -std=gnu++20 -g -O2 -Wall -pedantic -mtune=native -Wl,-O1 -o spade sequence.cc Itemset.o Array.o Eqclass.o Lists.o extl2.o partition.o maxgap.o -lm sequence.cc: In function ‘void parse_args(int, char**)’: sequence.cc:245:46: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 245 | if (read(c,(char *)&DBASE_NUM_TRANS,ITSZ) < ITSZ){ sequence.cc:255:44: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 255 | if (read(c,(char *)&DBASE_MAXITEM,ITSZ) < ITSZ){ sequence.cc:259:48: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 259 | if (read(c,(char *)&DBASE_AVG_CUST_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ sequence.cc:263:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 263 | if (read(c,(char *)&DBASE_AVG_TRANS_SZ,FTSZ) < FTSZ){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ sequence.cc:267:46: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘long unsigned int’ [-Wsign-compare] 267 | if (read(c,(char *)&DBASE_TOT_TRANS,ITSZ) < ITSZ){ cp spade ../../inst/bin make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src/cSPADE' # Note that these are now the only ones in use. ../inst/bin/exttpose --version Zaki TPOSE 2001 (2023) ../inst/bin/spade --version Zaki cSPADE 2001 (2023) make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0bamIS/R.INSTALL15e8a422ab3cd7/arulesSequences/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arulesSequences/00new/arulesSequences/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘itemsets’ in package ‘arulesSequences’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arulesSequences) * installing *source* package ‘kdml’ ... ** this is package ‘kdml’ version ‘1.1.1’ ** package ‘kdml’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kdml) * installing *source* package ‘arulesCBA’ ... ** this is package ‘arulesCBA’ version ‘1.2.9’ ** package ‘arulesCBA’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphYRUDd/R.INSTALL15f02515015e33/arulesCBA/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cba.c -o cba.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dll.c -o dll.o gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weighted.c -o weighted.o gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o arulesCBA.so cba.o dll.o weighted.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphYRUDd/R.INSTALL15f02515015e33/arulesCBA/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arulesCBA/00new/arulesCBA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arulesCBA) begin installing package ‘qCBA’ * installing *source* package ‘qCBA’ ... ** this is package ‘qCBA’ version ‘1.0.2’ ** package ‘qCBA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qCBA) * installing *source* package ‘eulerr’ ... ** this is package ‘eulerr’ version ‘8.3.0’ ** package ‘eulerr’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.95.0 (f2d3ce0bd 2026-03-21) (built from a source tarball) Using rustc 1.95.0 (59807616e 2026-04-14) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src' gcc-16 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/.cargo/config.toml; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling libm v0.2.16 Compiling autocfg v1.5.1 Compiling num-traits v0.2.19 Compiling proc-macro2 v1.0.107 Compiling quote v1.0.47 Compiling unicode-ident v1.0.24 Compiling paste v1.0.15 Compiling syn v2.0.119 Compiling num-integer v0.1.47 Compiling num-bigint v0.4.8 Compiling num-complex v0.4.6 Compiling crossbeam-utils v0.8.22 Compiling libc v0.2.189 Compiling rand_core v0.10.1 Compiling bytemuck v1.25.2 Compiling safe_arch v0.7.4 Compiling num-rational v0.4.2 Compiling matrixmultiply v0.3.11 Compiling zerocopy v0.8.56 Compiling cfg-if v1.0.4 Compiling crossbeam-epoch v0.9.20 Compiling getrandom v0.4.3 Compiling wide v0.7.33 Compiling approx v0.5.1 Compiling cpufeatures v0.3.0 Compiling rawpointer v0.2.1 Compiling crossbeam-deque v0.8.7 Compiling simba v0.9.1 Compiling chacha20 v0.10.1 Compiling nalgebra-macros v0.3.0 Compiling extendr-ffi v0.9.0 Compiling rayon-core v1.13.0 Compiling anyhow v1.0.104 Compiling typenum v1.20.1 Compiling ppv-lite86 v0.2.21 Compiling nalgebra v0.34.2 Compiling rand v0.10.2 Compiling num-iter v0.1.46 Compiling i_float v4.1.0 Compiling i_shape v4.0.0 Compiling num v0.4.3 Compiling rand_distr v0.6.0 Compiling rand_chacha v0.10.0 Compiling syn v3.0.3 Compiling web-time v1.1.0 Compiling i_tree v0.19.0 Compiling i_key_sort v0.11.0 Compiling either v1.18.0 Compiling lazy_static v1.5.0 Compiling extendr-api v0.9.0 Compiling extendr-macros v0.9.0 Compiling nalgebra-sparse v0.11.0 Compiling basin v1.5.1 Compiling rayon v1.12.0 Compiling i_overlay v8.1.0 Compiling readonly v0.2.14 Compiling finitediff v0.2.0 Compiling log v0.4.33 Compiling once_cell v1.21.4 Compiling eunoia v1.9.0 Compiling eulerr v0.0.0 (/home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms note: native-static-libs: -lR -lc -lm -lrt -lpthread -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 2m 23s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/.cargo; gcc-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o eulerr.so entrypoint.o -L./rust/target/release -leulerr -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/.cargo /home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQiII4H/R.INSTALL15d8104ae9d523/eulerr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-eulerr/00new/eulerr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eulerr) * installing *source* package ‘seqHMM’ ... ** this is package ‘seqHMM’ version ‘2.2.0’ ** package ‘seqHMM’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDj8h47/R.INSTALL15e6666519584b/seqHMM/src' g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c EM_mnhmm.cpp -o EM_mnhmm.o EM_mnhmm.cpp: In member function ‘Rcpp::List EM_mnhmm::run(bool)’: EM_mnhmm.cpp:840:7: warning: variable ‘total_em_steps’ set but not used [-Wunused-but-set-variable=] 840 | int total_em_steps = 0; | ^~~~~~~~~~~~~~ g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c EM_nhmm.cpp -o EM_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_EM_fanhmm.cpp -o R_EM_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_EM_mfanhmm.cpp -o R_EM_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_EM_mnhmm.cpp -o R_EM_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_EM_nhmm.cpp -o R_EM_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_backward_fanhmm.cpp -o R_backward_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_backward_mfanhmm.cpp -o R_backward_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_backward_mnhmm.cpp -o R_backward_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_backward_nhmm.cpp -o R_backward_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_forward_fanhmm.cpp -o R_forward_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_forward_mfanhmm.cpp -o R_forward_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_forward_mnhmm.cpp -o R_forward_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_forward_nhmm.cpp -o R_forward_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_log_objective_fanhmm.cpp -o R_log_objective_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_log_objective_mfanhmm.cpp -o R_log_objective_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_log_objective_mnhmm.cpp -o R_log_objective_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_log_objective_nhmm.cpp -o R_log_objective_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_loglik_fanhmm.cpp -o R_loglik_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_loglik_mfanhmm.cpp -o R_loglik_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_loglik_mnhmm.cpp -o R_loglik_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_loglik_nhmm.cpp -o R_loglik_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_posterior_probs_fanhmm.cpp -o R_posterior_probs_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_posterior_probs_mfanhmm.cpp -o R_posterior_probs_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_posterior_probs_mnhmm.cpp -o R_posterior_probs_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_posterior_probs_nhmm.cpp -o R_posterior_probs_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict_fanhmm.cpp -o R_predict_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict_mfanhmm.cpp -o R_predict_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict_mnhmm.cpp -o R_predict_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_predict_nhmm.cpp -o R_predict_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_simulate_fanhmm.cpp -o R_simulate_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_simulate_mfanhmm.cpp -o R_simulate_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_simulate_mnhmm.cpp -o R_simulate_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_simulate_nhmm.cpp -o R_simulate_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_viterbi_fanhmm.cpp -o R_viterbi_fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_viterbi_mfanhmm.cpp -o R_viterbi_mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_viterbi_mnhmm.cpp -o R_viterbi_mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c R_viterbi_nhmm.cpp -o R_viterbi_nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cost_matrix.cpp -o cost_matrix.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c create_Q.cpp -o create_Q.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c eta_to_gamma.cpp -o eta_to_gamma.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fanhmm.cpp -o fanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_quantiles.cpp -o fast_quantiles.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c get_W_idx.cpp -o get_W_idx.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c get_parameters.cpp -o get_parameters.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c joint_probability.cpp -o joint_probability.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c list_to_field.cpp -o list_to_field.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c logSumExp.cpp -o logSumExp.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mfanhmm.cpp -o mfanhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mnhmm.cpp -o mnhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nhmm.cpp -o nhmm.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-EM.cpp -o pre2-EM.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-forwardbackward.cpp -o pre2-forwardbackward.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-log_EM.cpp -o pre2-log_EM.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-log_forwardbackward.cpp -o pre2-log_forwardbackward.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-log_objective.cpp -o pre2-log_objective.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-loglik.cpp -o pre2-loglik.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-objective.cpp -o pre2-objective.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-optCoef.cpp -o pre2-optCoef.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pre2-viterbi.cpp -o pre2-viterbi.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c reparma.cpp -o reparma.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sample.cpp -o sample.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c softmax.cpp -o softmax.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sum_to_zero.cpp -o sum_to_zero.o g++-16 -std=gnu++20 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/nloptr/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c viterbi.cpp -o viterbi.o g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o seqHMM.so EM_mnhmm.o EM_nhmm.o R_EM_fanhmm.o R_EM_mfanhmm.o R_EM_mnhmm.o R_EM_nhmm.o R_backward_fanhmm.o R_backward_mfanhmm.o R_backward_mnhmm.o R_backward_nhmm.o R_forward_fanhmm.o R_forward_mfanhmm.o R_forward_mnhmm.o R_forward_nhmm.o R_log_objective_fanhmm.o R_log_objective_mfanhmm.o R_log_objective_mnhmm.o R_log_objective_nhmm.o R_loglik_fanhmm.o R_loglik_mfanhmm.o R_loglik_mnhmm.o R_loglik_nhmm.o R_posterior_probs_fanhmm.o R_posterior_probs_mfanhmm.o R_posterior_probs_mnhmm.o R_posterior_probs_nhmm.o R_predict_fanhmm.o R_predict_mfanhmm.o R_predict_mnhmm.o R_predict_nhmm.o R_simulate_fanhmm.o R_simulate_mfanhmm.o R_simulate_mnhmm.o R_simulate_nhmm.o R_viterbi_fanhmm.o R_viterbi_mfanhmm.o R_viterbi_mnhmm.o R_viterbi_nhmm.o RcppExports.o cost_matrix.o create_Q.o eta_to_gamma.o fanhmm.o fast_quantiles.o get_W_idx.o get_parameters.o joint_probability.o list_to_field.o logSumExp.o mfanhmm.o mnhmm.o nhmm.o pre2-EM.o pre2-forwardbackward.o pre2-log_EM.o pre2-log_forwardbackward.o pre2-log_objective.o pre2-loglik.o pre2-objective.o pre2-optCoef.o pre2-viterbi.o reparma.o sample.o softmax.o sum_to_zero.o viterbi.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDj8h47/R.INSTALL15e6666519584b/seqHMM/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-seqHMM/00new/seqHMM/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (seqHMM) checking arules_1.7.15.tar.gz ... checking arc_1.4.2.tar.gz ... checking arlclustering_1.0.5.tar.gz ... checking arulesCBA_1.2.9.tar.gz ... checking arulesNBMiner_0.1.9.tar.gz ... checking arulesSequences_0.2-32.tar.gz ... checking arulesViz_1.5.4.tar.gz ... checking clickstream_1.3.4.tar.gz ... checking CLONETv2_2.2.1.tar.gz ... checking CRE_0.2.7.tar.gz ... checking daltoolbox_1.3.787.tar.gz ... checking discnorm_0.2.2.tar.gz ... checking fdm2id_1.0.1.tar.gz ... checking GroupBN_1.2.0.tar.gz ... checking ibmdbR_1.51.0.tar.gz ... checking icdhelper_0.1.2.tar.gz ... checking opusminer_0.1-1.tar.gz ... checking pervasive_1.0.tar.gz ... checking qCBA_1.0.2.tar.gz ... checking RareComb_1.1.tar.gz ... checking rCBA_0.4.3.tar.gz ... checking recommenderlab_1.0.7.tar.gz ... checking rgnoisefilt_1.1.3.tar.gz ... checking RulesTools_0.1.1.tar.gz ... checking sbrl_1.4.tar.gz ... checking TELP_1.0.3.tar.gz ... checking ctsem_3.11.1.tar.gz ... checking fcaR_2.1.0.tar.gz ... checking manydist_0.5.1.tar.gz ... checking rattle_5.6.2.tar.gz ... checking pmml_2.6.1.tar.gz ... checking tidylearn_0.5.0.tar.gz ... checking nuggets_2.2.3.tar.gz ... checking SurvivalTests_1.0.tar.gz ... checking gp3sequences_0.3.0.tar.gz ... Depends: Package: arules Depends: Matrix (>= 1.4-0), R (>= 4.5.0) Imports: generics, graphics, methods, stats, utils Timings: user system elapsed arules 159.203 13.355 176.441 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 33 Check results summary: arules ... OK rdepends_arc ... OK rdepends_arlclustering ... OK rdepends_arulesCBA ... OK rdepends_arulesNBMiner ... OK rdepends_arulesSequences ... OK rdepends_arulesViz ... OK rdepends_clickstream ... OK rdepends_CLONETv2 ... OK rdepends_CRE ... OK rdepends_ctsem ... OK rdepends_daltoolbox ... OK rdepends_discnorm ... OK rdepends_fcaR ... OK rdepends_fdm2id ... OK rdepends_gp3sequences ... OK rdepends_GroupBN ... OK rdepends_ibmdbR ... OK rdepends_icdhelper ... OK rdepends_manydist ... OK rdepends_nuggets ... ERROR * checking tests ... [46s/46s] ERROR rdepends_opusminer ... OK rdepends_pervasive ... OK rdepends_pmml ... OK rdepends_qCBA ... OK rdepends_RareComb ... OK rdepends_rattle ... OK rdepends_rCBA ... OK rdepends_recommenderlab ... OK rdepends_rgnoisefilt ... OK rdepends_RulesTools ... OK rdepends_sbrl ... OK rdepends_SurvivalTests ... OK rdepends_TELP ... OK rdepends_tidylearn ... OK Check results changes: Package: nuggets Check: tests New result: ERROR Package: recommenderlab Check: CRAN incoming feasibility Old result: NOTE