* using log directory ‘/srv/hornik/tmp/CRAN/arlclustering.Rcheck’ * using R Under development (unstable) (2024-07-12 r86893) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1+b1) Debian flang-new version 18.1.8 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘arlclustering/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘arlclustering’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘The package maintainer ’ New submission Possibly misspelled words in DESCRIPTION: ARL (3:8) ARLClustering (8:14) preprocess (8:163) The Description field should not start with the package name, 'This package' or similar. DESCRIPTION fields with placeholder content: Maintainer: The package maintainer * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘arlclustering’ can be installed ... [4s/4s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Maintainer field differs from that derived from Authors@R Maintainer: ‘The package maintainer ’ Authors@R: ‘Mohamed El-Moussaoui ’ * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [6s/6s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [4s/5s] OK * checking for unstated dependencies in ‘tests’ ... WARNING 'library' or 'require' call not declared from: ‘microbenchmark’ * checking tests ... [2s/2s] ERROR Running ‘testthat.R’ [1s/1s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(arlclustering) > > test_check("arlclustering") Loading required package: Matrix Attaching package: 'arules' The following objects are masked from 'package:base': abbreviate, write [ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ChanFacebook.R:7:1'): (code run outside of `test_that()`) ────── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-ChanFacebook.R:7:1 ── Error ('test-Facebook.R:7:1'): (code run outside of `test_that()`) ────────── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-Facebook.R:7:1 ── Error ('test-NetScience.R:7:1'): (code run outside of `test_that()`) ──────── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-NetScience.R:7:1 ── Error ('test-dolphins.R:7:1'): (code run outside of `test_that()`) ────────── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-dolphins.R:7:1 ── Error ('test-karate.R:7:1'): (code run outside of `test_that()`) ──────────── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-karate.R:7:1 ── Error ('test-lesmiserables.R:7:1'): (code run outside of `test_that()`) ───── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-lesmiserables.R:7:1 ── Error ('test-wordadjacency.R:7:1'): (code run outside of `test_that()`) ───── Error in `library(microbenchmark)`: there is no package called 'microbenchmark' Backtrace: ▆ 1. └─base::library(microbenchmark) at test-wordadjacency.R:7:1 [ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [20s/20s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘ChanFacebook-Dataset.Rmd’ using rmarkdown --- finished re-building ‘ChanFacebook-Dataset.Rmd’ --- re-building ‘Dolphins-Dataset.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/arlclustering.Rcheck/vign_test/arlclustering/vignettes/Dolphins-Dataset_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 10269 bytes Input file size = 10359 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7600 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7600 Output IDAT size = 7600 bytes (2669 bytes decrease) Output file size = 7678 bytes (2681 bytes = 25.88% decrease) --- finished re-building ‘Dolphins-Dataset.Rmd’ --- re-building ‘Facebook-Dataset.Rmd’ using rmarkdown Quitting from lines 27-33 [unnamed-chunk-2] (Facebook-Dataset.Rmd) Error: processing vignette 'Facebook-Dataset.Rmd' failed with diagnostics: Error in reading GML file: /srv/hornik/tmp/CRAN/arlclustering.Rcheck/arlclustering/extdata/facebook.gml At vendor/cigraph/src/io/gml.c:454 : Parse error in GML file, line 3 (syntax error, unexpected keyword, expecting string or number or [), Parse error --- failed re-building ‘Facebook-Dataset.Rmd’ --- re-building ‘General-Introduction.Rmd’ using rmarkdown --- finished re-building ‘General-Introduction.Rmd’ --- re-building ‘Karate-Dataset.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/arlclustering.Rcheck/vign_test/arlclustering/vignettes/Karate-Dataset_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9086 bytes Input file size = 9176 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6854 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6854 Output IDAT size = 6854 bytes (2232 bytes decrease) Output file size = 6932 bytes (2244 bytes = 24.46% decrease) --- finished re-building ‘Karate-Dataset.Rmd’ --- re-building ‘LesMiserables-Dataset.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/arlclustering.Rcheck/vign_test/arlclustering/vignettes/LesMiserables-Dataset_files/figure-html/unnamed-chunk-8-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 9921 bytes Input file size = 10011 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7678 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7678 Output IDAT size = 7678 bytes (2243 bytes decrease) Output file size = 7756 bytes (2255 bytes = 22.53% decrease) --- finished re-building ‘LesMiserables-Dataset.Rmd’ --- re-building ‘NetScience-Dataset.Rmd’ using rmarkdown --- finished re-building ‘NetScience-Dataset.Rmd’ SUMMARY: processing the following file failed: ‘Facebook-Dataset.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... NOTE Found the following files/directories: ‘log.txt’ * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 WARNING, 3 NOTEs