* using log directory ‘/home/hornik/tmp/CRAN_pretest/ardea.Rcheck’
* using R Under development (unstable) (2026-09-16 r90549)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 23.1.0 (2)
    Debian flang version 23.1.0 (2)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-09-17 02:13:04 UTC
* checking for file ‘ardea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ardea’ version ‘0.0.5’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Nicholas Cooley <npcooley@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  CUDA (12:169)
  GPUs (3:44, 12:74)
  OpenCL (12:161)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ardea’ can be installed ... [3s/3s] WARNING
Found the following significant warnings:
  opencl/contexts.c:85:28: warning: 'clCreateCommandQueue' is deprecated [-Wdeprecated-declarations]
See ‘/home/hornik/tmp/CRAN_pretest/ardea.Rcheck/00install.out’ for details.
* used C compiler: ‘Debian clang version 23.1.1 (2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘introduction_to_ardea.Rmd’ using rmarkdown
Error: processing vignette 'introduction_to_ardea.Rmd' failed with diagnostics:
there is no package called ‘BiocStyle’
--- failed re-building ‘introduction_to_ardea.Rmd’

SUMMARY: processing the following file failed:
  ‘introduction_to_ardea.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE