test_that("path length is correct", { fragments.df <- data.frame(matrix(c(1,1, 2,1, 3,1, 4,1, 5,1, 6,1, 7,2, 8,2, 9,1, 10,1, 11,2, 12,2, 13,1, 14,3, 15,1, 16,1, 17,2, 18,1, 19,1, 20,1, 21,1, 22,1, 23,3, 24,3, 25,2, 26,2, 27,2, 28,2, 29,2, 30,2, 31,2, 32,2), ncol=2, byrow=T)) colnames(fragments.df) <- c("node", "layer") edges <- data.frame(matrix(c(1,2, 3,4, 4,5, 6,7, 7,8, 8,6, 9,10, 10,11, 11,12, 12,9, 13,14, 14,15, 13,15, 15,16, 14,17, 18,19, 19,20, 20,18, 19,21, 22,23, 23,24, 24,25, 26,27, 27,28, 28,29, 26,29, 29,32, 31,32, 31,30, 30,29, 31,29), ncol=2, byrow=T)) g <- make_frag_object(cr=edges, fragments=fragments.df) g <- make_cr_graph(g) expect_equal(frag.path.lengths(g), c(31, 20, 5)) }) test_that("path length (cumulative) is correct", { fragments.df <- data.frame(matrix(c(1,1, 2,1, 3,1, 4,1, 5,1, 6,1, 7,2, 8,2, 9,1, 10,1, 11,2, 12,2, 13,1, 14,3, 15,1, 16,1, 17,2, 18,1, 19,1, 20,1, 21,1, 22,1, 23,3, 24,3, 25,2, 26,2, 27,2, 28,2, 29,2, 30,2, 31,2, 32,2), ncol=2, byrow=T)) colnames(fragments.df) <- c("node", "layer") edges <- data.frame(matrix(c(1,2, 3,4, 4,5, 6,7, 7,8, 8,6, 9,10, 10,11, 11,12, 12,9, 13,14, 14,15, 13,15, 15,16, 14,17, 18,19, 19,20, 20,18, 19,21, 22,23, 23,24, 24,25, 26,27, 27,28, 28,29, 26,29, 29,32, 31,32, 31,30, 30,29, 31,29), ncol=2, byrow=T)) g <- make_frag_object(cr=edges, fragments=fragments.df) g <- make_cr_graph(g) expect_equal(frag.path.lengths(g, cumulative = T), c(1, 0.6451613, 0.1612903), tolerance = 0.00001) })