* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/archeofrag.Rcheck’
* using R Under development (unstable) (2024-12-15 r87442)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-1) 14.2.0
    GNU Fortran (Debian 14.2.0-1) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘archeofrag/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘archeofrag’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/9s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘archeofrag’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [33s/33s] ERROR
  Running ‘testthat.R’ [33s/33s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(archeofrag)
  > 
  > test_check("archeofrag")
  More than 2 layers: the 'frag.edges.weighting' function is applied to each pair of layers.
  More than 2 layers: the 'frag.edges.weighting' function is applied to each pair of layers.
  More than 2 layers: the 'frag.edges.weighting' function is applied to each pair of layers.
  More than 2 layers: the 'frag.edges.weighting' function is applied to each pair of layers.
                     H1 != H2? p.value Obs. value/H1 Obs. value/H2
  edges                  FALSE    0.45         lower         lower
  weightsum              FALSE    0.55         lower         lower
  balance                FALSE    0.38        within        within
  components.balance     FALSE    0.39        within        within
  disturbance            FALSE    0.36        within        within
  admixture              FALSE    0.09        within        within
  cohesion1               TRUE    0.02        within        higher
  cohesion2               TRUE       0        within         lower
  [ FAIL 1 | WARN 733 | SKIP 0 | PASS 65 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-frag.simul.compare.R:11:3'): frag.simul.compare works ────────
  res[[3]]$p.value (`actual`) not equal to c("0.4", "0.57", "0.38", "0.39", "0.36", "0.08", "0.01", "0") (`expected`).
  
  `actual`:   "0.45" "0.55" "0.38" "0.39" "0.36" "0.09" "0.02" "0"
  `expected`: "0.4"  "0.57" "0.38" "0.39" "0.36" "0.08" "0.01" "0"
  
  [ FAIL 1 | WARN 733 | SKIP 0 | PASS 65 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR