installing dependencies ‘clarabel’, ‘glpkAPI’

begin installing package ‘clarabel’
begin installing package ‘glpkAPI’
* installing *source* package ‘glpkAPI’ ...
** this is package ‘glpkAPI’ version ‘1.3.4.1’
** package ‘glpkAPI’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-15
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-15 accepts -g... yes
checking for gcc-15 option to enable C11 features... none needed
checking how to run the C preprocessor... gcc-15 -E
checking for prefix by checking for glpsol... no
configure: No prefix given, trying /usr and /usr/local
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for glpk.h... yes
checking for library containing glp_create_prob... none required
checking for glp_print_ranges... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTR7vJc/R.INSTALL34c4192dc4b175/glpkAPI/src'
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c glpkAPI.c -o glpkAPI.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c glpkCallback.c -o glpkCallback.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_CONFIG_H -I/usr/include -I/usr/local/include  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o glpkAPI.so glpkAPI.o glpkCallback.o init.o -L/usr/local/lib -L/usr/lib -L/usr/lib64 -lglpk -lgmp -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTR7vJc/R.INSTALL34c4192dc4b175/glpkAPI/src'
installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-glpkAPI/00new/glpkAPI/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glpkAPI)
* installing *source* package ‘clarabel’ ...
** this is package ‘clarabel’ version ‘0.11.1’
** package ‘clarabel’ successfully unpacked and MD5 sums checked
** using staged installation
Using cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)
Using rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src'
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
# In some environments, ~/.cargo/bin might not be included in PATH, so we need
# to set it here to ensure cargo can be invoked. It is appended to PATH and
# therefore is only used if cargo is absent from the user's PATH.
export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \
  echo "Rust version:" `rustc --version` && \
  echo "Cargo version:" `cargo --version` && \
  if [ "" != "wasm32-unknown-emscripten" ]; then \
    if [ "yes" = "yes" ]; then \
      mkdir -p /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/.cargo;  \
      cp ./rust/cargo_vendor_config.toml /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/.cargo/config.toml;  \
      /usr/bin/tar --extract --xz -f ./rust/vendor.tar.xz -C ./rust ;  \
      export CARGO_HOME=/home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/.cargo;  \
      export R_HOME=/home/hornik/tmp/R;  \
      export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin";  \
      export RUSTFLAGS="-C linker=gcc-15"; \
      cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target --release --offline; \
    else \
      cargo build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target; \
    fi \
  else \
    export CC="gcc-15" && \
    export R_HOME="/home/hornik/tmp/R" && \
    export CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " && \
    export LDFLAGS="-Wl,-O1" && \
    export CARGO_PROFILE_DEV_PANIC="abort" && \
    export CARGO_PROFILE_RELEASE_PANIC="abort" && \
    cargo +nightly build -j 2 --lib --manifest-path=./rust/Cargo.toml --target-dir /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target -Zbuild-std=panic_abort,std; \
  fi
Rust version: rustc 1.91.1 (ed61e7d7e 2025-11-07) (built from a source tarball)
Cargo version: cargo 1.91.1 (ea2d97820 2025-10-10) (built from a source tarball)
   Compiling proc-macro2 v1.0.101
   Compiling unicode-ident v1.0.19
   Compiling syn v1.0.109
   Compiling autocfg v1.5.0
   Compiling num-traits v0.2.19
   Compiling fnv v1.0.7
   Compiling quote v1.0.40
   Compiling syn v2.0.106
   Compiling ident_case v1.0.1
   Compiling strsim v0.10.0
   Compiling libc v0.2.176
   Compiling darling_core v0.14.4
   Compiling serde_core v1.0.226
   Compiling darling_macro v0.14.4
   Compiling memchr v2.7.5
   Compiling r-src v0.2.2 (https://github.com/bnaras/r-src?rev=03e133e1947cf96829f28bd3ebbd906391523dc2#03e133e1)
   Compiling darling v0.14.4
   Compiling serde v1.0.226
   Compiling find-msvc-tools v0.1.2
   Compiling shlex v1.3.0
   Compiling cc v1.2.38
   Compiling derive_builder_core v0.11.2
   Compiling num-complex v0.4.6
   Compiling serde_derive v1.0.226
   Compiling thiserror v1.0.69
   Compiling serde_json v1.0.145
   Compiling rustversion v1.0.22
   Compiling derive_builder_macro v0.11.2
   Compiling savvy v0.8.13
   Compiling aho-corasick v1.1.3
   Compiling lapack-sys v0.14.0
   Compiling blas-sys v0.7.1
   Compiling thiserror-impl v1.0.69
   Compiling savvy-bindgen v0.8.13
   Compiling clarabel v0.11.1
   Compiling hashbrown v0.16.0
   Compiling either v1.15.0
   Compiling once_cell v1.21.3
   Compiling ryu v1.0.20
   Compiling itoa v1.0.15
   Compiling equivalent v1.0.2
   Compiling regex-syntax v0.8.6
   Compiling indexmap v2.11.4
   Compiling regex-automata v0.4.10
   Compiling enum_dispatch v0.3.13
   Compiling itertools v0.11.0
   Compiling savvy-macro v0.8.13
   Compiling blas v0.22.0
   Compiling lapack v0.19.0
   Compiling serde-big-array v0.5.1
   Compiling derive_builder v0.11.2
   Compiling lapack-src v0.11.0
   Compiling blas-src v0.11.1
   Compiling amd v0.2.2
   Compiling savvy-ffi v0.8.13
   Compiling cfg-if v1.0.3
   Compiling lazy_static v1.5.0
   Compiling regex v1.11.2
   Compiling clarabel v0.11.1 (/home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust)
    Finished `release` profile [optimized] target(s) in 59.42s
rm -Rf /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/.cargo
rm -Rf ./rust/vendor
rm -Rf /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target/release/build
gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o clarabel.so init.o -L/home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target/release -lclarabel -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
rm -f /home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src/rust/target/release/libclarabel.a
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprC7CIh/R.INSTALL34c41846cc0e6e/clarabel/src'
installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-clarabel/00new/clarabel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clarabel)

checking aramappings_0.1.3.tar.gz ...

Depends:
Package: aramappings
  Depends: R (>= 3.5)
  Imports: clarabel, CVXR, glpkAPI, Matrix, parallel, pracma, Rglpk,
    slam, ggplot2, grDevices, grid, stats

Timings:
              user system elapsed
aramappings 65.448    4.6  72.886

Results:
Check status summary:
                  ERROR
  Source packages     1

Check results summary:
aramappings ... ERROR
* checking examples ... [0s/0s] ERROR
* checking tests ... [39s/39s] ERROR