* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/aqp.Rcheck’
* using R Under development (unstable) (2025-02-10 r87710)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-12) 14.2.0
    GNU Fortran (Debian 14.2.0-12) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘aqp/DESCRIPTION’ ... OK
* this is package ‘aqp’ version ‘2.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [7s/9s] NOTE
Maintainer: ‘Dylan Beaudette <dylan.beaudette@usda.gov>’

Suggests or Enhances not in mainstream repositories:
  sharpshootR

Size of tarball: 5114250 bytes
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘sharpshootR’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘aqp’ can be installed ... [13s/13s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/23s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [32s/31s] ERROR
Running examples in ‘aqp-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: quickSPC
> ### Title: Quickly Assemble a SoilProfileCollection
> ### Aliases: quickSPC
> 
> ### ** Examples
> 
> 
> # list-based template
> x <- list(
+ id = 'P1',
+ depths = c(25, 33, 100, 150),
+ name = c('A', 'Bw', 'Bt', 'Cr'),
+ clay = c(12, 15, 22, 25),
+ soil_color = c('10YR 3/3', '10YR 4/4', '10YR 4/6', '5G 6/2')
+ )
> 
> s <- quickSPC(x)
> plotSPC(s, name.style = 'center-center', cex.names = 1)
> 
> # character template, mode 1
> # horizon thickness is generated at random (uniform [5,20])
> x <- 'A-Bt1-Bt2-Bt3-Cr-R'
> 
> s <- quickSPC(x)
Error: package `digest` is required
Execution halted
* checking for unstated dependencies in ‘demo’ ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [25s/24s] ERROR
  Running ‘testthat.R’ [25s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(aqp)
  This is aqp 2.2
  > 
  > # limit all tests involving data.table 
  > # to 2 threads for CRAN compliance
  > data.table::setDTthreads(Sys.getenv("OMP_THREAD_LIMIT", unset = 2))
  > 
  > # Sys.setenv("_SP_EVOLUTION_STATUS_"=2)
  > test_check("aqp")
  [ FAIL 1 | WARN 0 | SKIP 24 | PASS 1343 ]
  
  ══ Skipped tests (24) ══════════════════════════════════════════════════════════
  • On CRAN (4): 'test-DT-tbl.R:6:3', 'test-color-signature.R:64:3',
    'test-fix-find-overlap.R:40:3', 'test-fix-find-overlap.R:89:3'
  • is.null(test) is TRUE (1): 'test-DT-tbl.R:105:5'
  • {Gmedian} is not installed (5): 'test-L1_profiles.R:7:3',
    'test-SoilProfileCollection-metadata.R:48:3', 'test-colorQuantiles.R:8:3',
    'test-colorQuantiles.R:23:3', 'test-colorQuantiles.R:37:3'
  • {Hmisc} is not installed (2): 'test-slab.R:90:3',
    'test-textureTriangleSummary.R:11:3'
  • {compositions} is not installed (1): 'test-bootstrapSoilTexture.R:11:3'
  • {gower} is not installed (8): 'test-aggregateColor.R:14:3',
    'test-aggregateColor.R:40:3', 'test-aggregateColor.R:48:3',
    'test-aggregateColor.R:78:3', 'test-mixMunsell.R:42:3',
    'test-mixMunsell.R:57:3', 'test-mixMunsell.R:107:3',
    'test-simulateColor.R:12:3'
  • {mpspline2} is not installed (2): 'test-spc2mpspline.R:2:3',
    'test-spc2mpspline.R:51:3'
  • {sf} is not installed (1): 'test-SPC-objects.R:205:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-genhz.R:95:3'): evalGenHZ works as expected ────────────────────
  Error: package `MASS` is required
  Backtrace:
      ▆
   1. └─aqp::evalGenHZ(sp3, genhz = "genhz", vars = "clay") at test-genhz.R:95:3
  
  [ FAIL 1 | WARN 0 | SKIP 24 | PASS 1343 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [8s/8s] OK
* checking HTML version of manual ... [5s/6s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 1 NOTE