context("estimate cambic boundaries") # construct a fake profile # one dark colored horizon (AB) and two cambic subhorizons Bw + BC spc <- data.frame(id = 1, taxsubgrp = "Lithic Haploxerepts", hzname = c("A","AB","Bw","BC","R"), hzdept = c(0, 20, 32, 42, 49), hzdepb = c(20, 32, 42, 49, 200), clay = c(19, 22, 22, 21, NA), texcl = c("l","l","l","l","br"), d_value = c(5, 5, 5, 6, NA), m_value = c(2.5, 3, 3, 4, NA), m_chroma = c(2, 3, 4, 4, NA)) # promote to SoilProfileCollection depths(spc) <- id ~ hzdept + hzdepb hzdesgnname(spc) <- 'hzname' hztexclname(spc) <- 'texcl' hzmetaname(spc, "clay") <- 'clay' test_that("getCambicBounds - basic functionality", { dfbound <- getCambicBounds(spc) expect_equal(nrow(dfbound), 1) expect_equal(as.numeric(dfbound[,c("cambic_top","cambic_bottom")]), c(32,49)) # exclude by entry of non-cambic bounds expect_true(is.na(getCambicBounds(spc, argi_bounds = c(32,49))$cambic_index)) # empty spc input expect_error(getCambicBounds(spc[0,])) }) test_that("getCambicBounds - special cases", { spc2 <- spc spc2$texcl <- "S" # all sandy textures dfbound <- getCambicBounds(spc2) expect_true(is.na(dfbound$cambic_index)) spc2 <- spc spc2$hzname <- c("A","Bt","BE","Bhs","Bt'") spc2$clay <- c(11,18,16,17,22) dfbound <- getCambicBounds(spc2) expect_true(is.na(dfbound$cambic_index)) }) test_that("getArgillicBounds - error conditions", { expect_error(getArgillicBounds(spc2, hzdesgn = "foo")) expect_error(getArgillicBounds(spc2, texcl.attr = "foo")) expect_error(getArgillicBounds(spc2, clay.attr = "foo")) })