* using log directory ‘/srv/hornik/tmp/CRAN/aqp.Rcheck’ * using R Under development (unstable) (2023-08-24 r85003) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (10) GNU Fortran (Debian 13.2.0-1) 13.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘aqp/DESCRIPTION’ ... OK * this is package ‘aqp’ version ‘2.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [6s/9s] NOTE Maintainer: ‘Dylan Beaudette ’ Found the following (possibly) invalid URLs: URL: http://www.cis.rit.edu/mcsl/online/munsell.php From: man/munsell2rgb.Rd man/rgb2munsell.Rd Status: Error Message: server certificate verification failed. CAfile: none CRLfile: none (Status without verification: OK) Found the following (possibly) invalid DOIs: DOI: doi.org/10.1016/j.geoderma.2022.115809 From: man/wilson2022.Rd Status: 404 Message: Not Found * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘aqp’ can be installed ... [10s/10s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [19s/19s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [276s/54s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed aggregateColor 27.920 0.680 3.320 simulateColor 17.663 0.364 1.859 mixMunsell 15.606 0.488 0.787 plotColorMixture 10.650 0.283 0.769 plotMultipleSPC 9.377 0.191 1.699 harden.rubification 8.908 0.177 1.422 harden.melanization 8.505 0.171 1.450 sp2 7.789 0.168 1.450 glom 7.727 0.171 0.950 contrastChart 7.533 0.216 0.831 jacobs2000 7.271 0.196 0.820 colorContrast 5.965 0.125 0.647 SoilProfileCollection-plotting-methods 5.551 0.136 0.588 Examples with CPU time > 2.5 times elapsed time user system elapsed ratio mixMunsell 15.606 0.488 0.787 20.450 plotColorMixture 10.650 0.283 0.769 14.217 colorContrastPlot 2.352 0.057 0.241 9.996 huePositionCircle 1.577 0.031 0.161 9.988 munsell2spc-SoilProfileCollection-method 1.036 0.052 0.109 9.982 addBracket 1.741 0.064 0.181 9.972 simulateColor 17.663 0.364 1.859 9.697 SoilProfileCollection-plotting-methods 5.551 0.136 0.588 9.672 colorContrast 5.965 0.125 0.647 9.413 contrastChart 7.533 0.216 0.831 9.325 accumulateDepths 1.000 0.025 0.110 9.318 munsell2rgb 4.066 0.099 0.450 9.256 jacobs2000 7.271 0.196 0.820 9.106 quickSPC 2.903 0.036 0.329 8.933 groupedProfilePlot 2.699 0.088 0.317 8.792 aggregateColor 27.920 0.680 3.320 8.614 estimateSoilColor 1.121 0.043 0.138 8.435 glom 7.727 0.171 0.950 8.314 plot_distance_graph 3.717 0.072 0.484 7.829 profileGroupLabels 2.102 0.039 0.314 6.818 sp3 4.210 0.092 0.634 6.785 spec2Munsell 3.985 0.141 0.614 6.720 harden.rubification 8.908 0.177 1.422 6.389 harden.melanization 8.505 0.171 1.450 5.983 plotMultipleSPC 9.377 0.191 1.699 5.632 sp2 7.789 0.168 1.450 5.488 horizonColorIndices 2.167 0.084 0.423 5.322 sp1 2.710 0.055 0.607 4.555 mollic.thickness.requirement 1.057 0.008 0.234 4.551 getClosestMunsellChip 1.348 0.036 0.329 4.207 rowley2019 1.089 0.020 0.309 3.589 spc2mpspline-SoilProfileCollection-method 3.234 0.056 0.930 3.538 segment 1.180 0.028 0.401 3.012 slab 1.591 0.024 0.551 2.931 sp6 2.873 0.056 1.101 2.660 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [150s/27s] NOTE Running ‘testthat.R’ [150s/27s] Running R code in ‘testthat.R’ had CPU time 5.7 times elapsed time * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [46s/19s] OK * checking PDF version of manual ... [8s/8s] OK * checking HTML version of manual ... [4s/4s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 NOTEs