# pscs unit tests context("particle size control section estimator") data(sp1, package = 'aqp') depths(sp1) <- id ~ top + bottom site(sp1) <- ~ group p <- sp1[1,] attr <- 'prop' # clay contents % q <- sp1[2,] x <- data.frame( peiid = 706300, taxsubgrp = "Lithic Humicryods", top = c(0, 13, 16, 18, 24, 40), bottom = c(13, 16, 18, 24, 40, 65), name = c("Oi", "A", "E", "Bhs", "2C", "2R"), texture = c("SPM", "SIL", "SIL", "SIL", "SIL", "BR"), prop = c(0, 6, 6, 6, 6, 6) ) depths(x) <- peiid ~ top + bottom site(x) <- ~ taxsubgrp test_that("estimatePSCS()", { # this soil has a clay decrease then a clay increase and an argillic horizon # the argillic horizon ends at a bedrock contact e <- estimatePSCS(p, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(e, c(49, 89)) # this soil does not have an argillic, so it is 25-100 but has 5cm thick O horizon # and is moderately deep to bedrock contact g <- estimatePSCS(q, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(30, 59)) ## special cases # thick (>50cm) Bt qbigbt <- sp1[3] qbigbt$name <- c("A","Bt1","Bt2","2Bt3", "2Bt4") g <- estimatePSCS(qbigbt, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(2, 52)) # thick Ap (>25cm) qbigap <- sp1[3] qbigap$name <- c("Ap1","Ap2","Ap3","C1", "C2") g <- estimatePSCS(qbigap, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(35, 67)) # soil less than 36cm deep qshallow <- trunc(q, 0, 27) g <- estimatePSCS(qshallow, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(5, 27)) # andisols qandisol <- q qandisol$tax_order <- "Andisols" g <- estimatePSCS(qandisol, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(5, 59)) # note: starts at bottom of OSM # very shallow (bottom depth <25cm) argillic? qminiargi <- sp1[3] qminiargi$name <- c("A","Bt","C1","2C2", "2C3") #idk... g <- estimatePSCS(qminiargi, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equivalent(g, c(2, 67)) # NOT 2, 13; would be 2,100 without limiting layer # error conditions q2 <- q expect_error(estimatePSCS(q2, clay.attr = 'foo', texcl.attr = "texture", hzdesgn = 'name')) q2$texture <- NULL expect_error(estimatePSCS(q2, clay.attr = 'prop', texcl.attr = "foo", hzdesgn = 'name')) q2 <- q q2$name <- NULL expect_error(estimatePSCS(q2, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'foo')) }) test_that("estimatePSCS() thin soil profile with O horizon", { expect_equal(estimatePSCS(x, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name'), c(13, 40)) expect_equal(estimatePSCS(c(q,x), clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name'), data.frame(id = c("706300", "P002"), pscs_top = c(13, 30), pscs_bottom = c(40, 59))) }) test_that("estimatePSCS() multiple profiles",{ e <- estimatePSCS(sp1, clay.attr = 'prop', texcl.attr = "texture", hzdesgn = 'name') expect_equal(e$pscs_top, c(49, 30, 2, 32, 5, 31, 25, 27, 28)) expect_equal(e$pscs_bottom, c(89, 59, 52, 62, 55, 106, 100, 102, 103)) })