R Under development (unstable) (2024-08-17 r87027 ucrt) -- "Unsuffered Consequences"
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> ## Testing the essence of the ssurgo workflow
> require(apsimx)
Loading required package: apsimx
APSIM(X) not found.
                        If APSIM(X) is installed in an alternative location,
                        set paths manually using 'apsimx_options' or 'apsim_options'.
                        You can still try as the package will look into the registry (under Windows)
> require(sf)
Loading required package: sf
Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE
> apsimx_options(warn.versions = FALSE)
> 
> extd.dir <- system.file("extdata", package = "apsimx")
> 
> run.test.ssurgo.workflow <- get(".run.local.tests", envir = apsimx.options)
> 
> tmp.dir <- tempdir()
> 
> if(run.test.ssurgo.workflow){
+ 
+   ## Read the main files
+   chorizon <- read.csv(paste0(extd.dir,"/ISUAG/SSURGO/ISUAG_SSURGO_chorizon.csv"))
+   component <- read.csv(paste0(extd.dir,"/ISUAG/SSURGO/ISUAG_SSURGO_component.csv"))
+   mapunit <- read.csv(paste0(extd.dir,"/ISUAG/SSURGO/ISUAG_SSURGO_mapunit.csv"))
+   mapunit.shp <- sf::st_read(paste0(extd.dir,"/ISUAG/SSURGO/ISUAG_SSURGO_Mapunits.shp"), quiet = TRUE)
+   
+   ## Get tables from SSURGO
+   srgtbls <- get_ssurgo_tables(lonlat = c(-93, 42))
+   chorizon <- srgtbls$chorizon
+   component <- srgtbls$component
+   mapunit <- srgtbls$mapunit
+   mapunit.shp <- srgtbls$mapunit.shp
+   
+   sp <- ssurgo2sp(mapunit = mapunit, 
+                   component = component, 
+                   chorizon = chorizon,
+                   mapunit.shp = mapunit.shp,
+                   nlayers = 20)
+   
+   ## For first soil
+   metadata <- attributes(sp[[1]])
+   metadata$names <- NULL; metadata$class <- NULL; metadata$row.names <- NULL;
+   
+   asp <- apsimx_soil_profile(nlayers = 20,
+                             Thickness = sp[[1]]$Thickness * 10,
+                             BD = sp[[1]]$BD,
+                             AirDry = sp[[1]]$AirDry,
+                             LL15 = sp[[1]]$LL15,
+                             DUL = sp[[1]]$DUL,
+                             SAT = sp[[1]]$SAT,
+                             KS = sp[[1]]$KS,
+                             Carbon = sp[[1]]$Carbon,
+                             crop.LL = sp[[1]]$LL15,
+                             soil.bottom = 200,
+                             metadata = metadata)
+   
+   check_apsimx_soil_profile(asp)
+ 
+   edit_apsimx_replace_soil_profile("WheatRye.apsimx",
+                                    src.dir = extd.dir,
+                                    wrt.dir = tmp.dir,
+                                    soil.profile = asp,
+                                    edit.tag = "-sp")
+   
+   inspect_apsimx("WheatRye-sp.apsimx", src.dir = tmp.dir, node = "Soil")
+   
+   inspect_apsimx("WheatRye-sp.apsimx", src.dir = tmp.dir, 
+                  node = "Soil", soil.child = "Physical")
+   
+   ## If I want to actually run the model
+   file.copy(paste0(extd.dir,"/Ames.met"),tmp.dir)
+   
+   inspect_apsimx("WheatRye-sp.apsimx", src.dir = tmp.dir, node = "Clock")
+   
+   sim <- apsimx("WheatRye-sp.apsimx", src.dir = tmp.dir, value = "report")
+   
+ }
> 
> if(run.test.ssurgo.workflow){
+   
+   ## Testing the shift feature
+   stbls <- get_ssurgo_tables(lonlat = c(-82.97, 40.739), shift = 300)
+   stbls$mapunit$mukey  
+   
+   sp0 <- ssurgo2sp(mapunit = stbls$mapunit, component = stbls$component,
+                    chorizon = stbls$chorizon, mapunit.shp = stbls$mapunit.shp)
+   
+   stbls.sp <- get_ssurgo_soil_profile(lonlat = c(-82.97, 40.739), shift = 300)
+   
+   
+ }
> 
> proc.time()
   user  system elapsed 
   0.78    0.12    0.87