R Under development (unstable) (2024-08-17 r87027 ucrt) -- "Unsuffered Consequences"
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> #### Testing extract data function
> require(apsimx)
Loading required package: apsimx
APSIM(X) not found.
                        If APSIM(X) is installed in an alternative location,
                        set paths manually using 'apsimx_options' or 'apsim_options'.
                        You can still try as the package will look into the registry (under Windows)
> packageVersion("apsimx")
[1] '2.8.0'
> apsimx_options(warn.versions = FALSE)
> 
> run.extract.tests <- get(".run.local.tests", envir = apsimx.options)
> 
> if(run.extract.tests){
+   
+   tmp.dir <- tempdir()
+   dir(tmp.dir)
+   ex.dir <- auto_detect_apsimx_examples()
+   
+   ### Test with all examples
+   ex.dir.list <- dir(ex.dir, recursive = FALSE, pattern = "apsimx$")
+   
+   ## ex.dir.list2 <- ex.dir.list[c(2,4,5,7:11,13,16:20,22:24,28:30,32:35)]
+   ## Excluded: AgPasture, BiomassRemovalFromPlant, Chickpea, Factorial, Grapevine
+   ##           Graph, Pinus, Rotation, SCRUM, SimpleGrazing, Stock  
+   ## Trying node = "Clock" - default
+   
+   ex.dir.list2 <- c("Barley.apsimx", "Canola.apsimx", "CanolaGrazing.apsimx",
+                     "Chicory.apsimx", "ControlledEnvironment.apsimx", "CsvWeather.apsimx",
+                     "Eucalyptus.apsimx", "EucalyptusRotation.apsimx", "FodderBeet.apsimx",
+                     "Maize.apsimx", "Mungbean.apsimx", "Oats.apsimx",  "OilPalm.apsimx",
+                     "Peanut.apsimx", "PlantainForage.apsimx", "Potato.apsimx", "RedClover.apsimx",
+                     "Slurp.apsimx", "Sorghum.apsimx", "Soybean.apsimx", "Sugarcane.apsimx",
+                     "SWIM.apsimx",  "Wheat.apsimx", "WhiteClover.apsimx") 
+   
+   for(i in ex.dir.list2){
+     if(!file.exists(file.path(tmp.dir, i))) file.copy(from = file.path(ex.dir, i), to = tmp.dir)  
+     cat("Simulation:", i)
+     (edf <- extract_data_apsimx(i, src.dir = tmp.dir))  
+     cat("\n")
+   }
+   
+   ## ex.dir.list3 <- ex.dir.list[c(1, 3, 6, 12, 14, 15, 21, 25, 26, 27, 31)]
+   ## Number 27: SimpleGrazing is a mess
+   ## ex.dir.list3 <- ex.dir.list[c(1, 3, 6, 12, 14, 15, 21, 25, 26, 31)]
+   
+   ex.dir.list3 <- c("AgPasture.apsimx", "BiomassRemovalFromPlant.apsimx",
+                     "Chickpea.apsimx", "Factorial.apsimx",   
+                     "Pinus.apsimx", "Rotation.apsimx",  
+                     "SCRUM.apsimx")   
+   
+   for(i in ex.dir.list3){
+     if(!file.exists(file.path(tmp.dir, i))) file.copy(from = file.path(ex.dir, i), to = tmp.dir)  
+     cat("Simulation:", i, "\n")
+     next
+     ## inspect_apsimx(i, src.dir = tmp.dir, node = "Other")
+     if(i == "AgPasture.apsimx")  (edf.agp <- extract_data_apsimx(i, src.dir = tmp.dir, root = "AgPastureExample"))  
+     if(i == "BiomassRemovalFromPlant.apsimx") (edf.brfp <- extract_data_apsimx(i, src.dir = tmp.dir, root = "SendingDatesFromOpperations"))  
+     if(i == "Chickpea.apsimx") (edf.chp <- extract_data_apsimx(i, src.dir = tmp.dir, root = list("Continuous_TOS", "Cont_TOS")))  
+     if(i == "Factorial.apsimx") (edf.fct <- extract_data_apsimx(i, src.dir = tmp.dir, root = list("RangeExperiment", "Base1")))  
+     if(i == "Pinus.apsimx") (edf.pns <- extract_data_apsimx(i, src.dir = tmp.dir, root = list("Plantation_IxF_Experiment", "Treatment", "Base")))  
+     if(i == "Rotation.apsimx") (edf.rot <- extract_data_apsimx(i, src.dir = tmp.dir, root = list("Mar", "Mar")))
+     if(i == "Rotation.apsimx") (edf.rot2 <- extract_data_apsimx(i, src.dir = tmp.dir, root = "Mar.Mar"))
+     if(i == "SCRUM.apsimx") (edf.scrm <- extract_data_apsimx(i, src.dir = tmp.dir, root = "Crop Comparisions.CropCompBase"))
+     cat("\n")
+   }
+ }
> 
> ### Testing extraction of initialwater and Solutes ----
> 
> if(run.extract.tests){
+   
+   ex.dir <- auto_detect_apsimx_examples()
+   
+   ex.dir.list <- dir(ex.dir, recursive = FALSE, pattern = "apsimx$")
+   ### Only select the simulations which do not have multiple simulations
+   
+   ex.dir.list4 <- ex.dir.list[c(2, 16, 17, 18, 24, 29, 30, 34)]
+   
+   ex.dir.list4 <- c("Barley.apsimx", "Maize.apsimx", "Mungbean.apsimx", "Oats.apsimx",     
+                     "RedClover.apsimx", "Sorghum.apsimx", "Soybean.apsimx", "Wheat.apsimx")
+   
+   for(i in ex.dir.list4){
+     (edf.iw <- extract_data_apsimx(i, src.dir = ex.dir, node = "Soil",
+                                   soil.child = "InitialWater"))
+     
+     (edf.sol <- extract_data_apsimx(i, src.dir = ex.dir, node = "Soil",
+                                    soil.child = "Solute"))  
+     
+     (edf.sol.NO3 <- extract_data_apsimx(i, src.dir = ex.dir, node = "Soil",
+                                        soil.child = "Solute", parm = "NO3"))    
+   }
+ }
> 
> ### Testing whether operations can be extracted
> if(FALSE){
+   
+   inspect_apsimx("FodderBeet.apsimx", ex.dir, node = "Other", parm = 2)
+   
+   inspect_apsimx("FodderBeet.apsimx", ex.dir, node = "Other", 
+                  parm = list(1, 3, 8, 4))
+ 
+   tmpp.dir <- "~/Dropbox/apsimx-other-issues/matteolongo/fodderbeet_quadr"
+   setwd(tmpp.dir)
+   dir()
+   inspect_apsimx("fodderbeet_quadr.apsimx", src.dir = tmpp.dir, node = "Other", parm = 3)
+   inspect_apsimx("fodderbeet_quadr.apsimx", src.dir = tmpp.dir, node = "Operations", 
+                  root = "quadr_0_l_fodderbeet")
+   edfo <- extract_data_apsimx("fodderbeet_quadr.apsimx", src.dir = tmpp.dir, node = "Operations", 
+                               root = "quadr_0_l_fodderbeet")
+ }
> 
> proc.time()
   user  system elapsed 
   0.54    0.06    0.60