* using log directory ‘/srv/hornik/tmp/CRAN/apsimx.Rcheck’
* using R Under development (unstable) (2024-08-17 r87027)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘apsimx/DESCRIPTION’ ... OK
* this is package ‘apsimx’ version ‘2.8.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/10s] NOTE
Maintainer: ‘Fernando Miguez <femiguez@iastate.edu>’

Found the following (possibly) invalid URLs:
  URL: https://www.sciencedirect.com/science/article/pii/S1364815217311921
    From: inst/doc/apsimx.html
    Status: 403
    Message: Forbidden
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘apsimx’ can be installed ... [10s/10s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking whether startup messages can be suppressed ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/23s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [23s/26s] OK
  Running ‘test_AK_point_sim.R’ [1s/1s]
  Running ‘test_allow_path_spaces.R’ [1s/1s]
  Running ‘test_apsim_met.R’ [1s/1s]
  Running ‘test_apsim_met_tt.R’ [1s/1s]
  Running ‘test_apsim_soils.R’ [1s/4s]
  Running ‘test_apsim_swim.R’ [1s/1s]
  Running ‘test_apsimx_factorial.R’ [1s/1s]
  Running ‘test_check_apsimx.R’ [1s/1s]
  Running ‘test_classic_examples.r’ [1s/1s]
  Running ‘test_compare_apsim.R’ [1s/1s]
  Running ‘test_cores_sens_apsimx.R’ [1s/1s]
  Running ‘test_edit.R’ [1s/1s]
  Running ‘test_edit_apsim_replace_soil_profile.R’ [1s/1s]
  Running ‘test_edit_apsim_xml.R’ [1s/1s]
  Running ‘test_edit_apsimx_json.R’ [1s/1s]
  Running ‘test_edit_apsimx_replacement.R’ [1s/1s]
  Running ‘test_edit_batch.R’ [1s/1s]
  Running ‘test_examples.R’ [0s/0s]
  Running ‘test_extract_data.R’ [1s/1s]
  Running ‘test_extract_values_apsimx.R’ [1s/1s]
  Running ‘test_get_daymet_apsim_met.R’ [1s/1s]
  Running ‘test_get_gsod_apsim_met.R’ [1s/1s]
  Running ‘test_get_isric_soil_profile.R’ [1s/1s]
  Running ‘test_grep_json_list.R’ [1s/1s]
  Running ‘test_initialwater.R’ [1s/1s]
  Running ‘test_insert_replacement_node.R’ [1s/1s]
  Running ‘test_inspect.R’ [1s/1s]
  Running ‘test_inspect_apsim_factorial.R’ [0s/0s]
  Running ‘test_inspect_apsim_xml.R’ [1s/1s]
  Running ‘test_inspect_apsimx_json.R’ [1s/0s]
  Running ‘test_optim_apsimx.R’ [1s/1s]
  Running ‘test_optim_apsimx_win.R’ [1s/1s]
  Running ‘test_read_apsim.R’ [1s/1s]
  Running ‘test_read_apsim_met.R’ [1s/1s]
  Running ‘test_replacements.R’ [1s/1s]
  Running ‘test_sens_apsimx.R’ [1s/1s]
  Running ‘test_soil_properties.R’ [1s/1s]
  Running ‘test_ssurgo2sp.R’ [1s/1s]
  Running ‘test_vignette.R’ [1s/1s]
  Running ‘test_worldmodeler.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [11s/11s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE