R Under development (unstable) (2024-05-04 r86521 ucrt) -- "Unsuffered Consequences"
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> ## Testing the edit function with a variety of files
> require(apsimx)
Loading required package: apsimx
APSIM(X) not found.
                        If APSIM(X) is installed in an alternative location,
                        set paths manually using 'apsimx_options' or 'apsim_options'.
                        You can still try as the package will look into the registry (under Windows)
> apsimx_options(warn.versions = FALSE)
> 
> extd.dir <- system.file("extdata", package = "apsimx")
> 
> run.apsimx.edit <- get(".run.local.tests", envir = apsimx.options)
> 
> tmp.dir <- tempdir()
> 
> if(run.apsimx.edit){
+   
+   ## Inspect manager, Let's look at fertiliser first
+   inspect_apsimx("maize-manager.apsimx", src.dir = extd.dir, 
+                  node = "Manager", parm = list("SowingFert", NA))
+   ## Inspect the fertilizer
+   inspect_apsimx("maize-manager.apsimx", src.dir = extd.dir, 
+                  node = "Manager", parm = list("SowingFert", 1))
+   ## Generate the path
+   pp <- inspect_apsimx("maize-manager.apsimx", src.dir = extd.dir, 
+                        node = "Manager", parm = list("SowingFert",1),
+                        print.path = TRUE)
+   ## Edit by moving the file to the current directory
+   edit_apsimx("maize-manager.apsimx", src.dir = extd.dir, 
+               wrt.dir = tmp.dir, overwrite = TRUE,
+               node = "Manager", manager.child = "SowingFertiliser",
+               parm = "Amount", value = 150)
+   ## Inspect the new file to make sure it worked
+   inspect_apsimx("maize-manager.apsimx", src.dir = tmp.dir, 
+                  node = "Manager", parm = list("SowingFert", 1))
+   
+   ## Test the maize manager folder
+   edit_apsimx("maize-manager-folder.apsimx", src.dir = extd.dir, 
+               wrt.dir = tmp.dir, overwrite = TRUE,
+               node = "Manager", manager.child = "SowingFertiliser",
+               parm = "Amount", value = 150)
+   
+ }
> 
> run.apsim.edit.millet <- get(".run.local.tests", envir = apsimx.options)
> 
> if(run.apsim.edit.millet){
+   
+   ## Inspect
+   pp <- inspect_apsim("Millet.apsim", src.dir = extd.dir, node = "Manager",
+                   parm = list("Sow on a fixed date",5), print.path = TRUE)
+   ## Edit
+   edit_apsim("Millet.apsim", src.dir = extd.dir, 
+              node = "Other", wrt.dir = tmp.dir,
+              overwrite = TRUE,
+              parm.path = pp,
+              value = 8)
+   
+   ## Try using manager.child
+   inspect_apsim("Millet.apsim", src.dir = extd.dir, node = "Manager")
+   ## This prints available manager childs
+   inspect_apsim("Millet.apsim", src.dir = extd.dir, node = "Manager",
+                 parm = list("Sow on a fixed date",NA))
+   
+   edit_apsim("Millet.apsim", src.dir = extd.dir, 
+               wrt.dir = tmp.dir, node = "Manager",
+              manager.child = "Sow on a fixed date",
+              edit.tag = "-smurf",
+              parm = "cultivar",
+              value = "smurfs")
+   
+   ## Testing with Maize factorial
+   pmf <- inspect_apsim("maize-factorial.apsim", src.dir = extd.dir, 
+                        root = "IA-CC_Canisteo_Cover",
+                        node = "Weather", print.path = TRUE)
+ 
+   ## Testing with the maize-factorial.apsim file
+   inspect_apsim("maize-factorial.apsim", src.dir = extd.dir, 
+                 node = "Weather",
+                 root = "IA-CC_Canisteo_Cover")
+ 
+   inspect_apsim("maize-factorial.apsim", src.dir = extd.dir, 
+                 node = "Weather",
+                 root = "IA-CC_Canisteo_No-Cover")
+ 
+   edit_apsim("maize-factorial.apsim", 
+              src.dir = extd.dir,
+              wrt.dir = tmp.dir,
+              node = "Weather", 
+              root = "IA-CC_Canisteo_Cover",
+              value = "Ames.met")
+   
+   inspect_apsim("maize-factorial-edited.apsim", 
+                 src.dir = tmp.dir, 
+                 node = "Weather",
+                 root = "IA-CC_Canisteo_Cover")
+   
+   edit_apsim("maize-factorial-edited.apsim", 
+              src.dir = tmp.dir,
+              overwrite = TRUE,
+              node = "Weather", 
+              root = "IA-CC_Canisteo_No-Cover",
+              value = "Boone.met")
+   
+   inspect_apsim("maize-factorial-edited.apsim", 
+                 src.dir = tmp.dir, 
+                 node = "Weather",
+                 root = "IA-CC_Canisteo_No-Cover")
+ }
> 
> run.apsimx.edit.maize.soil <- get(".run.local.tests", envir = apsimx.options)
> 
> if(run.apsimx.edit.maize.soil){
+   
+   inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, 
+                  node = "Soil", parm = "Site", print.path = TRUE)
+   
+   edit_apsimx("Wheat.apsimx", 
+               src.dir = extd.dir, wrt.dir = tmp.dir,
+               node = "Soil", soil.child = "Metadata", 
+               parm = "Site", value = "Ames")
+   
+   inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir, 
+                  node = "Soil")
+   
+ }
> 
> run.apsimx.edit.soil.soilwat <- get(".run.local.tests", envir = apsimx.options)
> 
> if(run.apsimx.edit.soil.soilwat){
+ 
+   inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, 
+                  node = "Soil", soil.child = "SoilWater", 
+                  parm = "SummerCona")
+     
+   edit_apsimx("Wheat.apsimx", 
+               src.dir = extd.dir, wrt.dir = tmp.dir,
+               node = "Soil", soil.child = "SoilWater", 
+               parm = "SummerCona", value = 6)
+   
+   inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir, 
+                  node = "Soil", soil.child = "SoilWater", 
+                  parm = "SummerCona")
+ 
+   pp <- inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir,
+                        node = "Soil", soil.child = "SoilWater",
+                        parm = "SummerCona", print.path = TRUE)  
+   
+   edit_apsimx("Wheat-edited.apsimx", 
+               src.dir = tmp.dir, wrt.dir = tmp.dir,
+               node = "Other", parm.path = pp, value = 7,
+               overwrite = TRUE)
+   
+   inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir, 
+                  node = "Soil", soil.child = "SoilWater", 
+                  parm = "SummerCona")
+   
+ }
> 
> ## Testing Report feature
> if(run.apsimx.edit){
+   
+  ex.dir <- auto_detect_apsimx_examples()
+  
+  inspect_apsimx("Wheat.apsimx", src.dir = ex.dir, node = "Report")
+  
+  edit_apsimx("Wheat.apsimx", src.dir = ex.dir,
+              node = "Report", wrt.dir = tmp.dir,
+              parm = "VariableNames",
+              value = "[Soil].esw")
+  
+  inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir, node = "Report")
+  
+  edit_apsimx("Wheat.apsimx", src.dir = ex.dir,
+              node = "Report", wrt.dir = tmp.dir,
+              parm = "EventNames",
+              value = "[Wheat].EndOfDay")
+  
+  inspect_apsimx("Wheat-edited.apsimx", src.dir = tmp.dir, node = "Report")
+  
+  ## Running soil carbon
+  edit_apsimx("Wheat.apsimx", src.dir = ex.dir,
+              node = "Report", wrt.dir = tmp.dir,
+              parm = "VariableNames",
+              value = "[Soil].Nutrient.Organic.C",
+              edit.tag = "-carbon")
+  
+  inspect_apsimx("Wheat-carbon.apsimx", src.dir = tmp.dir, node = "Report")
+  
+  sim.o <- apsimx("Wheat-carbon.apsimx", src.dir = tmp.dir)
+  
+  edit_apsimx("Soybean.apsimx", src.dir = ex.dir,
+              node = "Report", wrt.dir = tmp.dir,
+              parm = "VariableNames",
+              value = "[Soil].Nutrient.Organic.C",
+              edit.tag = "-carbon")
+  
+  inspect_apsimx("Soybean-carbon.apsimx", src.dir = tmp.dir, node = "Report")
+  
+  sim.o <- apsimx("Soybean-carbon.apsimx", src.dir = tmp.dir)
+   
+ }
> 
> #### Testing edit when node = "Other" ----
> 
> if(run.apsimx.edit){
+   
+   extd.dir <- system.file("extdata", package = "apsimx")
+   
+   pp <- inspect_apsimx("Wheat.apsimx", src.dir = extd.dir, node = "Manager",
+                        parm = list("Fert", NA))
+   
+   edit_apsimx("Wheat.apsimx", node = "Other",
+               src.dir = extd.dir, wrt.dir = tmp.dir,
+               parm.path = pp, parm = "Amount", value = 5,
+               overwrite = TRUE)
+ 
+   inspect_apsimx("Wheat.apsimx", src.dir = tmp.dir, node = "Manager",
+                  parm = list("Fert", NA))  
+   
+   file.copy(file.path(tmp.dir, "Wheat.apsimx"), ".")
+   
+   #### Testing edit when node == "Other" and there are multiple simulations
+   ex.dir <- auto_detect_apsimx_examples()
+   file.copy(file.path(ex.dir, "AgPasture.apsimx"), tmp.dir)
+   
+   inspect_apsimx("AgPasture.apsimx", src.dir = tmp.dir, node = "Other")
+   inspect_apsimx("AgPasture.apsimx", src.dir = tmp.dir, node = "Other", parm = 2)
+   
+   edit_apsimx("AgPasture.apsimx", src.dir = tmp.dir, 
+               node = "Other",
+               parm.path = ".Simulations.AgPastureExample.Clock.Start",
+               value = "2024-12-31T00:00:00")
+   
+   inspect_apsimx("AgPasture-edited.apsimx", src.dir = tmp.dir, 
+                  root = list("AgPastureExample"))
+   ### It might have worked?
+   file.remove(file.path(tmp.dir, "AgPasture-edited.apsimx"))
+   
+   
+ }
> 
> ## Testing changing variables in the outputfile
> if(run.apsimx.edit){
+  
+   extd.dir <- system.file("extdata", package = "apsimx")
+   file.copy(file.path(extd.dir, "Millet.apsim"), tmp.dir)
+   
+   inspect_apsim("Millet.apsim", src.dir = tmp.dir, node = "Outputfile", parm = "title")
+ 
+   edit_apsim("Millet.apsim", src.dir = tmp.dir,
+              node = "Outputfile", parm = "variables", 
+              value = "surfaceom_wt")
+     
+   edit_apsim("Millet.apsim", src.dir = tmp.dir,
+              node = "Outputfile",
+              parm = "variables", value = "surfaceom_wt")
+   
+   inspect_apsim("Millet-edited.apsim", src.dir = tmp.dir, 
+                 node = "Outputfile", parm = "variables")
+   
+ }
> 
> proc.time()
   user  system elapsed 
   0.70    0.09    0.79