* using log directory ‘/srv/hornik/tmp/CRAN/appRiori.Rcheck’
* using R Under development (unstable) (2024-02-11 r85891)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘appRiori/DESCRIPTION’ ... OK
* this is package ‘appRiori’ version ‘0.0.4’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] Note_to_CRAN_maintainers
Maintainer: ‘Umberto Granziol <umberto.granziol@unipd.it>’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘appRiori’ can be installed ... [5s/5s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
contrasts_summary:
  function(x, ...)
contrasts_summary.glmerMod:
  function(model)

contrasts_summary:
  function(x, ...)
contrasts_summary.default:
  function(model)

contrasts_summary:
  function(x, ...)
contrasts_summary.merMod:
  function(model)

print:
  function(x, ...)
print.hypr_contrasts_results:
  function(obj)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] NOTE
contrasts_summary.default: no visible global function definition for
  ‘terms’
contrasts_summary.default : <anonymous>: no visible global function
  definition for ‘contrasts’
contrasts_summary.default : <anonymous>: no visible global function
  definition for ‘cmat2eqs’
contrasts_summary.merMod: no visible global function definition for
  ‘terms’
contrasts_summary.merMod : <anonymous>: no visible global function
  definition for ‘contrasts’
contrasts_summary.merMod : <anonymous>: no visible global function
  definition for ‘cmat2eqs’
Undefined global functions or variables:
  cmat2eqs contrasts terms
Consider adding
  importFrom("stats", "contrasts", "terms")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] NOTE
prepare_Rd: contrast_summary.Rd:29-33: Dropping empty section \examples
prepare_Rd: print.hypr_contrasts_results.Rd:19-23: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Missing link or links in Rd file 'contrast_summary.Rd':
  ‘[hypr::hyper]{hypr::hyper}’ ‘[stats::lm]{stats::lm}’
  ‘[stats::lm]{stats::glm}’ ‘[lme4::lmer]{lmer::lmer}’

Missing link or links in Rd file 'print.hypr_contrasts_results.Rd':
  ‘[hypr::hyper]{hypr::hyper}’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'contrast_summary.Rd'
  ‘x’ ‘...’

Undocumented arguments in Rd file 'print.hypr_contrasts_results.Rd'
  ‘obj’
Documented arguments not in \usage in Rd file 'print.hypr_contrasts_results.Rd':
  ‘an’

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [2s/2s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 WARNINGs, 2 NOTEs