Package check result: NOTE Check: dependencies in R code, Result: NOTE H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fc9819736c1 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fc981d3ff13 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fc981d2e4da in H5T__register /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fc981d1690a in H5T__register_int /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fc981d0d59d in H5T__init_package /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fc981d063a0 in H5T_init /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fc98151b392 in H5_init_library /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fc9815215ac in H5open /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fc98149f8a6 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fc980bb5446 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fc980bb5446 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fca1e600fad in call_init elf/dl-init.c:74:3 #12 0x7fca1e600fad in call_init elf/dl-init.c:26:1 #13 0x7fca1e60107b in _dl_init elf/dl-init.c:121:5 #14 0x7fca1e5fe425 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fca1e607a27 in dl_open_worker elf/dl-open.c:799:3 #16 0x7fca1e5fe398 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fca1e607da7 in _dl_open elf/dl-open.c:874:17 #18 0x7fca1ce99257 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fca1e5fe398 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fca1e5fe4be in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fca1ce98d66 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fca1ce99308 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fca1ce99308 in dlopen dlfcn/dlopen.c:81:12 #24 0x55ae278792f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) #25 0x7fca1d716a0f in AddDLL /home/hornik/src/R/src/main/Rdynload.c:874:14 #26 0x7fca1d715e17 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1248:12 #27 0x7fca1dafa069 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8114:14 #28 0x7fca1daae904 in bcEval /home/hornik/src/R/src/main/eval.c:7497:16 #29 0x7fca1daad03f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fca1dab7475 in R_execClosure /home/hornik/src/R/src/main/eval.c:2389:22 #31 0x7fca1dab2f6c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2302:16 #32 0x7fca1daad9bf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2324:16 #33 0x7fca1daad9bf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7fca1dbf11c6 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:264:15 #35 0x7fca1dbf41d0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7fca1dbf3fe4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1235:5 #37 0x7fca1dbf42ca in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #38 0x55ae278f8dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7fca1ce33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7fca1ce33d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x55ae27815370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fc98196eba9 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fc981ce5657 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fc98196e307 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fc981d18ed2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fc98151c491 in H5_term_library /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fc9815216d0 in H5close /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fc98149f410 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fca1ce4c290 in __run_exit_handlers stdlib/exit.c:118:8 #8 0x7fca1ce4c359 in exit stdlib/exit.c:148:3 #9 0x7fca1dfa347c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1300:5 #10 0x7fca1dfad707 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fca1dbf4014 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1225:5 #12 0x7fca1dbf4014 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1236:5 #13 0x7fca1dbf42ca in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #14 0x55ae278f8dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fca1ce33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fca1ce33d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x55ae27815370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 Post-processing issues found: File: 00check.log H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)'