* using log directory ‘/home/hornik/tmp/CRAN_special_clang-san/apLCMS.Rcheck’
* using R Under development (unstable) (2025-09-11 r88813)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3+b1)
    Debian flang-new version 19.1.7 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘apLCMS/DESCRIPTION’ ... OK
* this is package ‘apLCMS’ version ‘6.8.4’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘apLCMS’ can be installed ... [41s/41s] OK
* used C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)'
/home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here
    #0 0x7fc9819736c1 in H5I_dec_ref /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:1261:41
    #1 0x7fc981d3ff13 in H5T__path_find_real /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:4842:13
    #2 0x7fc981d2e4da in H5T__register /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:2333:36
    #3 0x7fc981d1690a in H5T__register_int /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:2282:8
    #4 0x7fc981d0d59d in H5T__init_package /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:1048:15
    #5 0x7fc981d063a0 in H5T_init /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:578:5
    #6 0x7fc98151b392 in H5_init_library /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:218:8
    #7 0x7fc9815215ac in H5open /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:930:5
    #8 0x7fc98149f8a6 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40
    #9 0x7fc980bb5446 in __cxx_global_var_init /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52
    #10 0x7fc980bb5446 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp
    #11 0x7fca1e600fad in call_init elf/dl-init.c:74:3
    #12 0x7fca1e600fad in call_init elf/dl-init.c:26:1
    #13 0x7fca1e60107b in _dl_init elf/dl-init.c:121:5
    #14 0x7fca1e5fe425 in _dl_catch_exception elf/dl-catch.c:215:7
    #15 0x7fca1e607a27 in dl_open_worker elf/dl-open.c:799:3
    #16 0x7fca1e5fe398 in _dl_catch_exception elf/dl-catch.c:241:8
    #17 0x7fca1e607da7 in _dl_open elf/dl-open.c:874:17
    #18 0x7fca1ce99257 in dlopen_doit dlfcn/dlopen.c:56:15
    #19 0x7fca1e5fe398 in _dl_catch_exception elf/dl-catch.c:241:8
    #20 0x7fca1e5fe4be in _dl_catch_error elf/dl-catch.c:260:19
    #21 0x7fca1ce98d66 in _dlerror_run dlfcn/dlerror.c:138:17
    #22 0x7fca1ce99308 in dlopen_implementation dlfcn/dlopen.c:71:10
    #23 0x7fca1ce99308 in dlopen dlfcn/dlopen.c:81:12
    #24 0x55ae278792f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd)
    #25 0x7fca1d716a0f in AddDLL /home/hornik/src/R/src/main/Rdynload.c:874:14
    #26 0x7fca1d715e17 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1248:12
    #27 0x7fca1dafa069 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8114:14
    #28 0x7fca1daae904 in bcEval /home/hornik/src/R/src/main/eval.c:7497:16
    #29 0x7fca1daad03f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8
    #30 0x7fca1dab7475 in R_execClosure /home/hornik/src/R/src/main/eval.c:2389:22
    #31 0x7fca1dab2f6c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2302:16
    #32 0x7fca1daad9bf in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2324:16
    #33 0x7fca1daad9bf in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12
    #34 0x7fca1dbf11c6 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:264:15
    #35 0x7fca1dbf41d0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11
    #36 0x7fca1dbf3fe4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1235:5
    #37 0x7fca1dbf42ca in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5
    #38 0x55ae278f8dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5
    #39 0x7fca1ce33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16
    #40 0x7fca1ce33d64 in __libc_start_main csu/../csu/libc-start.c:360:3
    #41 0x55ae27815370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 
H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)'
/home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here
    #0 0x7fc98196eba9 in H5I__clear_type_cb /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:548:47
    #1 0x7fc981ce5657 in H5SL_try_free_safe /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26
    #2 0x7fc98196e307 in H5I_clear_type /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5I.c:508:8
    #3 0x7fc981d18ed2 in H5T_top_term_package /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5T.c:1444:19
    #4 0x7fc98151c491 in H5_term_library /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:310:20
    #5 0x7fc9815216d0 in H5close /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/src/H5.c:960:5
    #6 0x7fc98149f410 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/Rtmp83c51C/R.INSTALL3ed384461369df/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24
    #7 0x7fca1ce4c290 in __run_exit_handlers stdlib/exit.c:118:8
    #8 0x7fca1ce4c359 in exit stdlib/exit.c:148:3
    #9 0x7fca1dfa347c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1300:5
    #10 0x7fca1dfad707 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5
    #11 0x7fca1dbf4014 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1225:5
    #12 0x7fca1dbf4014 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1236:5
    #13 0x7fca1dbf42ca in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5
    #14 0x55ae278f8dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5
    #15 0x7fca1ce33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16
    #16 0x7fca1ce33d64 in __libc_start_main csu/../csu/libc-start.c:360:3
    #17 0x55ae27815370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd)

SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [71s/71s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [10s/10s] OK
* checking PDF version of manual ... [6s/6s] OK
* checking HTML version of manual ... [3s/4s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE