* installing *source* package ‘apLCMS’ ... ** this is package ‘apLCMS’ version ‘6.8.4’ ** using staged installation ** libs using C++ compiler: ‘Debian clang version 19.1.7 (3+b2)’ clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c CalDen.cpp -o CalDen.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-xtra/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_special_clang-san/Library/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -Wdeprecated-literal-operator -c RcppExports.cpp -o RcppExports.o clang++-19 -fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-xtra/lib -Wl,-O1 -o apLCMS.so CalDen.o RcppExports.o -L/home/hornik/tmp/R-d-clang-xtra/lib -lR installing to /home/hornik/tmp/CRAN_special_clang-san/apLCMS.Rcheck/00LOCK-apLCMS/00new/apLCMS/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f82329736c1 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f8232d3ff13 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f8232d2e4da in H5T__register /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f8232d1690a in H5T__register_int /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f8232d0d59d in H5T__init_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f8232d063a0 in H5T_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f823251b392 in H5_init_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f82325215ac in H5open /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f823249f8a6 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f8231bb5446 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f8231bb5446 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f82cb3defad in call_init elf/dl-init.c:74:3 #12 0x7f82cb3defad in call_init elf/dl-init.c:26:1 #13 0x7f82cb3df07b in _dl_init elf/dl-init.c:121:5 #14 0x7f82cb3dc425 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f82cb3e5a27 in dl_open_worker elf/dl-open.c:799:3 #16 0x7f82cb3dc398 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f82cb3e5da7 in _dl_open elf/dl-open.c:874:17 #18 0x7f82c9c99257 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f82cb3dc398 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f82cb3dc4be in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f82c9c98d66 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f82c9c99308 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f82c9c99308 in dlopen dlfcn/dlopen.c:81:12 #24 0x5609462982f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) #25 0x7f82ca5159ff in AddDLL /home/hornik/src/R/src/main/Rdynload.c:874:14 #26 0x7f82ca514e07 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1248:12 #27 0x7f82ca8f7739 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8114:14 #28 0x7f82ca8abfd4 in bcEval /home/hornik/src/R/src/main/eval.c:7497:16 #29 0x7f82ca8aa70f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f82ca8b4b45 in R_execClosure /home/hornik/src/R/src/main/eval.c:2389:22 #31 0x7f82ca8b063c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2302:16 #32 0x7f82ca8ab08f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2324:16 #33 0x7f82ca8ab08f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f82ca9ee896 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:264:15 #35 0x7f82ca9f18a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f82ca9f16b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1235:5 #37 0x7f82ca9f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #38 0x560946317dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f82c9c33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f82c9c33d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x560946234370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f823296eba9 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f8232ce5657 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f823296e307 in H5I_clear_type /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f8232d18ed2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f823251c491 in H5_term_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f82325216d0 in H5close /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f823249f410 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f82c9c4c290 in __run_exit_handlers stdlib/exit.c:118:8 #8 0x7f82c9c4c359 in exit stdlib/exit.c:148:3 #9 0x7f82cada0b4c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1300:5 #10 0x7f82cadaadd7 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f82ca9f16e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1225:5 #12 0x7f82ca9f16e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1236:5 #13 0x7f82ca9f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #14 0x560946317dd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f82c9c33ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f82c9c33d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x560946234370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fcc063736c1 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7fcc0673ff13 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7fcc0672e4da in H5T__register /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7fcc0671690a in H5T__register_int /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7fcc0670d59d in H5T__init_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7fcc067063a0 in H5T_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7fcc05f1b392 in H5_init_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7fcc05f215ac in H5open /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7fcc05e9f8a6 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7fcc055b5446 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7fcc055b5446 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7fcc9ed0bfad in call_init elf/dl-init.c:74:3 #12 0x7fcc9ed0bfad in call_init elf/dl-init.c:26:1 #13 0x7fcc9ed0c07b in _dl_init elf/dl-init.c:121:5 #14 0x7fcc9ed09425 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7fcc9ed12a27 in dl_open_worker elf/dl-open.c:799:3 #16 0x7fcc9ed09398 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7fcc9ed12da7 in _dl_open elf/dl-open.c:874:17 #18 0x7fcc9d5a9257 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7fcc9ed09398 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7fcc9ed094be in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7fcc9d5a8d66 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7fcc9d5a9308 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7fcc9d5a9308 in dlopen dlfcn/dlopen.c:81:12 #24 0x56273e9ce2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) #25 0x7fcc9df159ff in AddDLL /home/hornik/src/R/src/main/Rdynload.c:874:14 #26 0x7fcc9df14e07 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1248:12 #27 0x7fcc9e2f7739 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8114:14 #28 0x7fcc9e2abfd4 in bcEval /home/hornik/src/R/src/main/eval.c:7497:16 #29 0x7fcc9e2aa70f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7fcc9e2b4b45 in R_execClosure /home/hornik/src/R/src/main/eval.c:2389:22 #31 0x7fcc9e2b063c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2302:16 #32 0x7fcc9e2ab08f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2324:16 #33 0x7fcc9e2ab08f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7fcc9e3ee896 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:264:15 #35 0x7fcc9e3f18a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7fcc9e3f16b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1235:5 #37 0x7fcc9e3f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #38 0x56273ea4ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7fcc9d543ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7fcc9d543d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x56273e96a370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7fcc0636eba9 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7fcc066e5657 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7fcc0636e307 in H5I_clear_type /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7fcc06718ed2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7fcc05f1c491 in H5_term_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7fcc05f216d0 in H5close /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7fcc05e9f410 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7fcc9d55c290 in __run_exit_handlers stdlib/exit.c:118:8 #8 0x7fcc9d55c359 in exit stdlib/exit.c:148:3 #9 0x7fcc9e7a0b4c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1300:5 #10 0x7fcc9e7aadd7 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7fcc9e3f16e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1225:5 #12 0x7fcc9e3f16e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1236:5 #13 0x7fcc9e3f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #14 0x56273ea4ddd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7fcc9d543ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7fcc9d543d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x56273e96a370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location H5I.c:1261:41: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f6df25736c1 in H5I_dec_ref /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:1261:41 #1 0x7f6df293ff13 in H5T__path_find_real /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:4842:13 #2 0x7f6df292e4da in H5T__register /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2333:36 #3 0x7f6df291690a in H5T__register_int /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:2282:8 #4 0x7f6df290d59d in H5T__init_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1048:15 #5 0x7f6df29063a0 in H5T_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:578:5 #6 0x7f6df211b392 in H5_init_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:218:8 #7 0x7f6df21215ac in H5open /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:930:5 #8 0x7f6df209f8a6 in H5::FileAccPropList::getConstant() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:66:40 #9 0x7f6df17b5446 in __cxx_global_var_init /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp:88:52 #10 0x7f6df17b5446 in _GLOBAL__sub_I_H5FaccProp.cpp /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5FaccProp.cpp #11 0x7f6e8af12fad in call_init elf/dl-init.c:74:3 #12 0x7f6e8af12fad in call_init elf/dl-init.c:26:1 #13 0x7f6e8af1307b in _dl_init elf/dl-init.c:121:5 #14 0x7f6e8af10425 in _dl_catch_exception elf/dl-catch.c:215:7 #15 0x7f6e8af19a27 in dl_open_worker elf/dl-open.c:799:3 #16 0x7f6e8af10398 in _dl_catch_exception elf/dl-catch.c:241:8 #17 0x7f6e8af19da7 in _dl_open elf/dl-open.c:874:17 #18 0x7f6e897a9257 in dlopen_doit dlfcn/dlopen.c:56:15 #19 0x7f6e8af10398 in _dl_catch_exception elf/dl-catch.c:241:8 #20 0x7f6e8af104be in _dl_catch_error elf/dl-catch.c:260:19 #21 0x7f6e897a8d66 in _dlerror_run dlfcn/dlerror.c:138:17 #22 0x7f6e897a9308 in dlopen_implementation dlfcn/dlopen.c:71:10 #23 0x7f6e897a9308 in dlopen dlfcn/dlopen.c:81:12 #24 0x561ac4f1d2f6 in dlopen (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x8f2f6) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) #25 0x7f6e8a1159ff in AddDLL /home/hornik/src/R/src/main/Rdynload.c:874:14 #26 0x7f6e8a114e07 in do_dynload /home/hornik/src/R/src/main/Rdynload.c:1248:12 #27 0x7f6e8a4f7739 in bcEval_loop /home/hornik/src/R/src/main/eval.c:8114:14 #28 0x7f6e8a4abfd4 in bcEval /home/hornik/src/R/src/main/eval.c:7497:16 #29 0x7f6e8a4aa70f in Rf_eval /home/hornik/src/R/src/main/eval.c:1167:8 #30 0x7f6e8a4b4b45 in R_execClosure /home/hornik/src/R/src/main/eval.c:2389:22 #31 0x7f6e8a4b063c in applyClosure_core /home/hornik/src/R/src/main/eval.c:2302:16 #32 0x7f6e8a4ab08f in Rf_applyClosure /home/hornik/src/R/src/main/eval.c:2324:16 #33 0x7f6e8a4ab08f in Rf_eval /home/hornik/src/R/src/main/eval.c:1280:12 #34 0x7f6e8a5ee896 in Rf_ReplIteration /home/hornik/src/R/src/main/main.c:264:15 #35 0x7f6e8a5f18a0 in R_ReplConsole /home/hornik/src/R/src/main/main.c:317:11 #36 0x7f6e8a5f16b4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1235:5 #37 0x7f6e8a5f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #38 0x561ac4f9cdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #39 0x7f6e89743ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #40 0x7f6e89743d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #41 0x561ac4eb9370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:1261:41 H5I.c:548:47: runtime error: call to function H5T__close_cb through pointer to incorrect function type 'int (*)(void *)' /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:3848: note: H5T__close_cb defined here #0 0x7f6df256eba9 in H5I__clear_type_cb /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:548:47 #1 0x7f6df28e5657 in H5SL_try_free_safe /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5SL.c:2369:26 #2 0x7f6df256e307 in H5I_clear_type /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5I.c:508:8 #3 0x7f6df2918ed2 in H5T_top_term_package /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5T.c:1444:19 #4 0x7f6df211c491 in H5_term_library /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:310:20 #5 0x7f6df21216d0 in H5close /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/src/H5.c:960:5 #6 0x7f6df209f410 in H5::H5Library::termH5cpp() /home/hornik/tmp/scratch/RtmpB78nVN/R.INSTALL3dae194002b20d/Rhdf5lib/src/hdf5/c++/src/H5Library.cpp:235:24 #7 0x7f6e8975c290 in __run_exit_handlers stdlib/exit.c:118:8 #8 0x7f6e8975c359 in exit stdlib/exit.c:148:3 #9 0x7f6e8a9a0b4c in Rstd_CleanUp /home/hornik/src/R/src/unix/sys-std.c:1300:5 #10 0x7f6e8a9aadd7 in R_CleanUp /home/hornik/src/R/src/unix/system.c:87:5 #11 0x7f6e8a5f16e4 in end_Rmainloop /home/hornik/src/R/src/main/main.c:1225:5 #12 0x7f6e8a5f16e4 in run_Rmainloop /home/hornik/src/R/src/main/main.c:1236:5 #13 0x7f6e8a5f199a in Rf_mainloop /home/hornik/src/R/src/main/main.c:1242:5 #14 0x561ac4f9cdd4 in main /home/hornik/src/R/src/main/Rmain.c:29:5 #15 0x7f6e89743ca7 in __libc_start_call_main csu/../sysdeps/nptl/libc_start_call_main.h:58:16 #16 0x7f6e89743d64 in __libc_start_main csu/../csu/libc-start.c:360:3 #17 0x561ac4eb9370 in _start (/home/hornik/tmp/R-d-clang-xtra/bin/exec/R+0x2b370) (BuildId: 8b69897b2fcd08f10a8fcf1956a30782b1479dfd) SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior H5I.c:548:47 ** testing if installed package keeps a record of temporary installation path * DONE (apLCMS)