* installing *source* package ‘annsearchR’ ... ** this is package ‘annsearchR’ version ‘0.1.0’ ** using staged installation Using cargo 1.96.1 (356927216 2026-06-26) (built from a source tarball) Using rustc 1.96.1 (31fca3adb 2026-06-26) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘Debian clang version 23.1.3 (1)’ clang-23 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-23/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c entrypoint.c -o entrypoint.o if [ -d ./vendor ]; then \ echo "=== Using offline vendor directory ==="; \ mkdir -p /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo/config.toml; \ elif [ -f ./rust/vendor.tar.xz ]; then \ echo "=== Using offline vendor tarball ==="; \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo/config.toml; \ fi === Using offline vendor tarball === export CARGO_HOME=/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo && \ export PATH="/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/R_check_bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.107 Compiling unicode-ident v1.0.26 Compiling quote v1.0.47 Compiling autocfg v1.5.1 Compiling libm v0.2.16 Compiling num-traits v0.2.19 Compiling crossbeam-utils v0.8.23 Compiling bytemuck v1.25.2 Compiling rand_core v0.6.4 Compiling rand v0.8.8 Compiling crossbeam-epoch v0.9.21 Compiling crossbeam-deque v0.8.8 Compiling cfg-if v1.0.5 Compiling num-complex v0.4.6 Compiling syn v2.0.119 Compiling nano-gemm-codegen v0.2.1 Compiling paste v1.0.15 Compiling rayon-core v1.13.0 Compiling bitflags v2.13.2 Compiling libc v0.2.190 Compiling version_check v0.9.5 Compiling pulp v0.22.3 Compiling raw-cpuid v11.6.0 Compiling either v1.19.0 Compiling rayon v1.12.0 Compiling pulp-wasm-simd-flag v0.1.1 Compiling reborrow v0.5.5 Compiling dyn-stack-macros v0.1.3 Compiling dyn-stack v0.13.2 Compiling once_cell v1.21.4 Compiling syn v3.0.6 Compiling seq-macro v0.3.6 Compiling ucd-trie v0.1.7 Compiling zerocopy v0.8.61 Compiling syn v1.0.109 Compiling getrandom v0.3.4 Compiling memchr v2.8.3 Compiling gemm-common v0.19.0 Compiling pest v2.9.2 Compiling nano-gemm-core v0.2.1 Compiling pest_meta v2.9.2 Compiling rand_core v0.9.5 Compiling interpol v0.2.1 Compiling pest_generator v2.9.2 Compiling equator-macro v0.4.2 Compiling nano-gemm-c64 v0.2.1 Compiling nano-gemm-f32 v0.2.1 Compiling nano-gemm-c32 v0.2.1 Compiling ppv-lite86 v0.2.21 Compiling nano-gemm-f64 v0.2.1 Compiling num-integer v0.1.47 Compiling crossbeam-queue v0.3.14 Compiling crossbeam-channel v0.5.17 Compiling defer v0.2.1 Compiling serde_core v1.0.229 Compiling crossbeam v0.8.5 Compiling private-gemm-x86 v0.1.22 Compiling num-bigint v0.4.8 Compiling rand_chacha v0.9.0 Compiling equator v0.4.2 Compiling pest_derive v2.9.2 Compiling atomic-wait v1.1.0 Compiling equator-macro v0.2.1 Compiling extendr-ffi v0.9.0 Compiling serde v1.0.229 Compiling equator v0.2.2 Compiling spindle v0.2.6 Compiling py_literal v0.4.0 Compiling rand v0.9.5 Compiling gemm-c64 v0.19.0 Compiling gemm-f32 v0.19.0 Compiling gemm-c32 v0.19.0 Compiling gemm-f64 v0.19.0 Compiling serde_derive v1.0.229 Compiling qd v0.8.0 Compiling num_cpus v1.17.0 Compiling equator-macro v0.6.0 Compiling virtue v0.0.18 Compiling generativity v1.2.1 Compiling thiserror v2.0.21 Compiling byteorder v1.5.0 Compiling bincode_derive v2.0.1 Compiling npyz v0.8.4 Compiling faer-traits v0.24.0 Compiling equator v0.6.0 Compiling gemm v0.19.0 Compiling nano-gemm v0.2.2 Compiling rand_distr v0.5.1 Compiling thiserror-impl v2.0.21 Compiling safe_arch v1.2.0 Compiling unty v0.0.4 Compiling lazy_static v1.5.1 Compiling extendr-api v0.9.0 Compiling partition v0.1.2 Compiling arbitrary-chunks v0.4.1 Compiling ann-search-rs v0.11.0 Compiling litrs v1.0.0 Compiling document-features v0.2.12 Compiling rdst v0.20.14 Compiling extendr-macros v0.9.0 Compiling bincode v2.0.1 Compiling wide v1.7.1 Compiling faer v0.24.4 Compiling readonly v0.2.14 Compiling fixedbitset v0.5.7 Compiling thousands v0.2.0 Compiling rustc-hash v2.1.3 Compiling annsearchr v0.1.0 (/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/rust) note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 3m 19s # --release matters here. config.R pins it to --release, and without it # cargo builds the document bin into target/debug, recompiling the lib and # every transitive dependency a second time just to emit the wrappers. # # RUSTFLAGS and the dev profile overrides have to match the build above for # the same reason. Both invocations share one target dir, and cargo keys its # fingerprint on RUSTFLAGS, so a flag set on one and not the other rebuilds # the whole dependency tree just to emit the wrappers. export CARGO_HOME=/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo && \ export PATH="/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/R_check_bin:/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo run -j 2 --offline --release --bin document --manifest-path=./rust/Cargo.toml --target-dir ./rust/target note: link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Compiling annsearchr v0.1.0 (/home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/rust) Finished `release` profile [optimized] target(s) in 47.03s Running `rust/target/release/document` # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo; clang-23 -std=gnu23 -shared -L/home/hornik/tmp/R-d-clang-23/lib -Wl,-O1 -o annsearchR.so entrypoint.o -L./rust/target/release -lannsearchR -L/home/hornik/tmp/R-d-clang-23/lib -lR rm -Rf /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/.cargo /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00_pkg_src/annsearchR/src/vendor ./rust/target installing to /home/hornik/tmp/CRAN_pretest/annsearchR.Rcheck/00LOCK-annsearchR/00new/annsearchR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (annsearchR)