* using log directory 'd:/RCompile/CRANincoming/R-devel/animl.Rcheck'
* using R Under development (unstable) (2026-01-26 r89334 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'animl/DESCRIPTION' ... OK
* this is package 'animl' version '3.1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [11s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'animl' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning in check_forbidden_install("Python packages") :
  cannot install Python packages during R CMD check
Warning in check_forbidden_install("Python packages") :
  cannot install Python packages during R CMD check
Using virtual environment "C:/Users/CRAN/Documents/.virtualenvs/animl_venv" ...
Requirement already satisfied: animl==3.1.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (3.1.1)
Requirement already satisfied: dill>=0.4.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (0.4.1)
Requirement already satisfied: numpy>=2.0.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (2.4.1)
Requirement already satisfied: onnxruntime-gpu>=1.23.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.23.2)
Requirement already satisfied: pandas>=2.2.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (3.0.0)
Requirement already satisfied: pillow>=11.0.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (12.1.0)
Requirement already satisfied: opencv-python>=4.12.0.88 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (4.13.0.90)
Requirement already satisfied: scikit-learn>=1.5.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.8.0)
Requirement already satisfied: timm>=1.0.9 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.0.24)
Requirement already satisfied: torch>=2.6.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (2.10.0)
Requirement already satisfied: torchvision>=0.21.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (0.25.0)
Requirement already satisfied: tqdm>=4.66.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (4.67.1)
Requirement already satisfied: ultralytics>=8.3.95 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (8.4.6)
Requirement already satisfied: wget>=3.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (3.2)
Requirement already satisfied: coloredlogs in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (15.0.1)
Requirement already satisfied: flatbuffers in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (25.12.19)
Requirement already satisfied: packaging in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (26.0)
Requirement already satisfied: protobuf in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (6.33.4)
Requirement already satisfied: sympy in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (1.14.0)
Requirement already satisfied: python-dateutil>=2.8.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from pandas>=2.2.2->animl==3.1.1) (2.9.0.post0)
Requirement already satisfied: tzdata in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from pandas>=2.2.2->animl==3.1.1) (2025.3)
Requirement already satisfied: six>=1.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from python-dateutil>=2.8.2->pandas>=2.2.2->animl==3.1.1) (1.17.0)
Requirement already satisfied: scipy>=1.10.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from scikit-learn>=1.5.2->animl==3.1.1) (1.17.0)
Requirement already satisfied: joblib>=1.3.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from scikit-learn>=1.5.2->animl==3.1.1) (1.5.3)
Requirement already satisfied: threadpoolctl>=3.2.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from scikit-learn>=1.5.2->animl==3.1.1) (3.6.0)
Requirement already satisfied: pyyaml in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (6.0.3)
Requirement already satisfied: huggingface_hub in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (1.3.4)
Requirement already satisfied: safetensors in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (0.7.0)
Requirement already satisfied: filelock in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.20.3)
Requirement already satisfied: typing-extensions>=4.10.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (4.15.0)
Requirement already satisfied: networkx>=2.5.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.6.1)
Requirement already satisfied: jinja2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.1.6)
Requirement already satisfied: fsspec>=0.8.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (2026.1.0)
Requirement already satisfied: setuptools in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (80.10.2)
Requirement already satisfied: mpmath<1.4,>=1.1.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from sympy->onnxruntime-gpu>=1.23.2->animl==3.1.1) (1.3.0)
Requirement already satisfied: colorama in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from tqdm>=4.66.5->animl==3.1.1) (0.4.6)
Requirement already satisfied: matplotlib>=3.3.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from ultralytics>=8.3.95->animl==3.1.1) (3.10.8)
Requirement already satisfied: requests>=2.23.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from ultralytics>=8.3.95->animl==3.1.1) (2.32.5)
Requirement already satisfied: psutil>=5.8.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from ultralytics>=8.3.95->animl==3.1.1) (7.2.1)
Requirement already satisfied: polars>=0.20.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from ultralytics>=8.3.95->animl==3.1.1) (1.37.1)
Requirement already satisfied: ultralytics-thop>=2.0.18 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from ultralytics>=8.3.95->animl==3.1.1) (2.0.18)
Requirement already satisfied: contourpy>=1.0.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from matplotlib>=3.3.0->ultralytics>=8.3.95->animl==3.1.1) (1.3.3)
Requirement already satisfied: cycler>=0.10 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from matplotlib>=3.3.0->ultralytics>=8.3.95->animl==3.1.1) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from matplotlib>=3.3.0->ultralytics>=8.3.95->animl==3.1.1) (4.61.1)
Requirement already satisfied: kiwisolver>=1.3.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from matplotlib>=3.3.0->ultralytics>=8.3.95->animl==3.1.1) (1.4.9)
Requirement already satisfied: pyparsing>=3 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from matplotlib>=3.3.0->ultralytics>=8.3.95->animl==3.1.1) (3.3.2)
Requirement already satisfied: polars-runtime-32==1.37.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from polars>=0.20.0->ultralytics>=8.3.95->animl==3.1.1) (1.37.1)
Requirement already satisfied: charset_normalizer<4,>=2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from requests>=2.23.0->ultralytics>=8.3.95->animl==3.1.1) (3.4.4)
Requirement already satisfied: idna<4,>=2.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from requests>=2.23.0->ultralytics>=8.3.95->animl==3.1.1) (3.11)
Requirement already satisfied: urllib3<3,>=1.21.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from requests>=2.23.0->ultralytics>=8.3.95->animl==3.1.1) (2.6.3)
Requirement already satisfied: certifi>=2017.4.17 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from requests>=2.23.0->ultralytics>=8.3.95->animl==3.1.1) (2026.1.4)
Requirement already satisfied: humanfriendly>=9.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from coloredlogs->onnxruntime-gpu>=1.23.2->animl==3.1.1) (10.0)
Requirement already satisfied: pyreadline3 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from humanfriendly>=9.1->coloredlogs->onnxruntime-gpu>=1.23.2->animl==3.1.1) (3.5.4)
Requirement already satisfied: hf-xet<2.0.0,>=1.2.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from huggingface_hub->timm>=1.0.9->animl==3.1.1) (1.2.0)
Requirement already satisfied: httpx<1,>=0.23.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from huggingface_hub->timm>=1.0.9->animl==3.1.1) (0.28.1)
Requirement already satisfied: shellingham in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from huggingface_hub->timm>=1.0.9->animl==3.1.1) (1.5.4)
Requirement already satisfied: typer-slim in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from huggingface_hub->timm>=1.0.9->animl==3.1.1) (0.21.1)
Requirement already satisfied: anyio in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from httpx<1,>=0.23.0->huggingface_hub->timm>=1.0.9->animl==3.1.1) (4.12.1)
Requirement already satisfied: httpcore==1.* in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from httpx<1,>=0.23.0->huggingface_hub->timm>=1.0.9->animl==3.1.1) (1.0.9)
Requirement already satisfied: h11>=0.16 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from httpcore==1.*->httpx<1,>=0.23.0->huggingface_hub->timm>=1.0.9->animl==3.1.1) (0.16.0)
Requirement already satisfied: MarkupSafe>=2.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from jinja2->torch>=2.6.0->animl==3.1.1) (3.0.3)
Requirement already satisfied: click>=8.0.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from typer-slim->huggingface_hub->timm>=1.0.9->animl==3.1.1) (8.3.1)

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... NOTE
Using virtual environment "C:/Users/CRAN/Documents/.virtualenvs/animl_venv" ...
+ "C:/Users/CRAN/Documents/.virtualenvs/animl_venv/Scripts/python.exe" -m pip install --upgrade --no-user "animl==3.1.1"
Requirement already satisfied: animl==3.1.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (3.1.1)
Requirement already satisfied: dill>=0.4.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (0.4.1)
Requirement already satisfied: numpy>=2.0.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (2.4.1)
Requirement already satisfied: onnxruntime-gpu>=1.23.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.23.2)
Requirement already satisfied: pandas>=2.2.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (3.0.0)
Requirement already satisfied: pillow>=11.0.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (12.1.0)
Requirement already satisfied: opencv-python>=4.12.0.88 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (4.13.0.90)
Requirement already satisfied: scikit-learn>=1.5.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.8.0)
Requirement already satisfied: timm>=1.0.9 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (1.0.24)
Requirement already satisfied: torch>=2.6.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (2.10.0)
Requirement already satisfied: torchvision>=0.21.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (0.25.0)
Requirement already satisfied: tqdm>=4.66.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (4.67.1)
Requirement already satisfied: ultralytics>=8.3.95 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (8.4.6)
Requirement already satisfied: wget>=3.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from animl==3.1.1) (3.2)
Requirement already satisfied: coloredlogs in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (15.0.1)
Requirement already satisfied: flatbuffers in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (25.12.19)
Requirement already satisfied: packaging in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (26.0)
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Requirement already satisfied: sympy in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from onnxruntime-gpu>=1.23.2->animl==3.1.1) (1.14.0)
Requirement already satisfied: python-dateutil>=2.8.2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from pandas>=2.2.2->animl==3.1.1) (2.9.0.post0)
Requirement already satisfied: tzdata in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from pandas>=2.2.2->animl==3.1.1) (2025.3)
Requirement already satisfied: six>=1.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from python-dateutil>=2.8.2->pandas>=2.2.2->animl==3.1.1) (1.17.0)
Requirement already satisfied: scipy>=1.10.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from scikit-learn>=1.5.2->animl==3.1.1) (1.17.0)
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Requirement already satisfied: threadpoolctl>=3.2.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from scikit-learn>=1.5.2->animl==3.1.1) (3.6.0)
Requirement already satisfied: pyyaml in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (6.0.3)
Requirement already satisfied: huggingface_hub in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (1.3.4)
Requirement already satisfied: safetensors in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from timm>=1.0.9->animl==3.1.1) (0.7.0)
Requirement already satisfied: filelock in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.20.3)
Requirement already satisfied: typing-extensions>=4.10.0 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (4.15.0)
Requirement already satisfied: networkx>=2.5.1 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.6.1)
Requirement already satisfied: jinja2 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (3.1.6)
Requirement already satisfied: fsspec>=0.8.5 in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from torch>=2.6.0->animl==3.1.1) (2026.1.0)
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Requirement already satisfied: colorama in c:\users\cran\docume~1\virtua~1\animl_~1\lib\site-packages (from tqdm>=4.66.5->animl==3.1.1) (0.4.6)
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It looks like this package (or a package it requires) has a startup
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* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
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* checking S3 generic/method consistency ... WARNING
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See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
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The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
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See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... [42s] NOTE
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Using virtual environment "C:/Users/CRAN/Documents/.virtualenvs/animl_venv" ...
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* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
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All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
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* checking Rd \usage sections ... NOTE
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The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [16s] OK
* checking PDF version of manual ... [21s] OK
* checking HTML version of manual ... OK
* DONE
Status: 4 WARNINGs, 6 NOTEs