* using log directory 'd:/RCompile/CRANincoming/R-devel/animl.Rcheck'
* using R Under development (unstable) (2025-10-25 r88970 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'animl/DESCRIPTION' ... OK
* this is package 'animl' version '3.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... WARNING
Found the following files with non-portable file names:
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-11212-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-16285-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-26700-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-41280-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-44232-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-64541-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-92001-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021-99788-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021_cougar-28229-0.jpg
  ~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021_cougar-65769-0.jpg
These are not fully portable file names.
See section 'Package structure' in the 'Writing R Extensions' manual.
Found the following non-portable file paths:
  animl/~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021_cougar-28229-0.jpg
  animl/~/animl-py/examples/Southwest/Animl-Directory/Frames/African forest 2-9-2021_cougar-65769-0.jpg

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section 'Package structure' in the 'Writing R Extensions' manual.
* checking whether package 'animl' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  '~'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [16s] OK
* checking whether the package can be loaded with stated dependencies ... [16s] OK
* checking whether the package can be unloaded cleanly ... [16s] OK
* checking whether the namespace can be loaded with stated dependencies ... [17s] OK
* checking whether the namespace can be unloaded cleanly ... [16s] OK
* checking loading without being on the library search path ... [16s] OK
* checking whether startup messages can be suppressed ... [15s] NOTE
Loading animl package...
1. Loading Python Environment (animl_env)...
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
animl-py loaded successfully.

It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
* checking S3 generic/method consistency ... WARNING
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
See section 'Generic functions and methods' in the 'Writing R
Extensions' manual.
* checking replacement functions ... WARNING
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
The argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... NOTE
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... [66s] NOTE
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
File 'animl/R/zzz.R':
  .onLoad calls:
    message("Loading animl package...")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in '?.onAttach'.

C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
load_class_list: no visible global function definition for 'read.csv'
Undefined global functions or variables:
  read.csv
Consider adding
  importFrom("utils", "read.csv")
to your NAMESPACE file.

C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'compute_batched_distance_matrix.Rd':
  \examples lines wider than 100 characters:
     ## Not run: dist_matrix <- compute_batched_distance_matrix(query_embeddings, database_embeddings, metric='cosine', batch_size=12)

Rd file 'load_detector.Rd':
  \examples lines wider than 100 characters:
     ## Not run: md_py <- megadetector("/mnt/machinelearning/megaDetector/md_v5a.0.0.pt", model_type='mdv5', device = 'cuda:0')

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... WARNING
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
Codoc mismatches from Rd file 'classify.Rd':
classify
  Code: function(model, detections, device = NULL, out_file = NULL,
                 file_col = "frame", crop = TRUE, normalize = TRUE,
                 resize_width = 480, resize_height = 480, batch_size =
                 1, num_workers = 1)
  Docs: function(model, detections, device = NULL, out_file = NULL,
                 file_col = "frame", crop = TRUE, normalize = TRUE,
                 resize_width = 480, resize_height = 480, batch_size =
                 1, workers = 1)
  Argument names in code not in docs:
    num_workers
  Argument names in docs not in code:
    workers
  Mismatches in argument names:
    Position: 11 Code: num_workers Docs: workers

C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'classify.Rd'
  'workers'
Documented arguments not in \usage in Rd file 'classify.Rd':
  'num_workers'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
C:\Users\CRAN\AppData\Local\R-MINI~1\envs\ANIML_~1\Lib\site-packages\onnxruntime\capi\onnxruntime_validation.py:27: UserWarning: Unsupported Windows version (2022server). ONNX Runtime supports Windows 10 and above, only.
  warnings.warn(
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [19s] OK
* checking PDF version of manual ... [12s] OK
* checking HTML version of manual ... OK
* DONE
Status: 6 WARNINGs, 6 NOTEs