* using log directory ‘/home/hornik/tmp/CRAN_pretest/aniSNA.Rcheck’
* using R Under development (unstable) (2026-10-26 r90766)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 23.1.0 (2)
    Debian flang version 23.1.0 (2)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-10-27 15:11:04 UTC
* checking for file ‘aniSNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘aniSNA’ version ‘1.2.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Michael Salter-Townshend <michael.salter-townshend@ucd.ie>’

New maintainer:
  Michael Salter-Townshend <michael.salter-townshend@ucd.ie>
Old maintainer(s):
  Prabhleen Kaur <prabhleen.kaur.ucd@gmail.com>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘aniSNA’ can be installed ... [8s/8s] OK
* used C++ compiler: ‘Debian clang version 23.1.3 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘references.bib’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
get_spatial_threshold: no visible binding for global variable
  ‘distance’
get_spatial_threshold: no visible binding for global variable
  ‘interactions_count’
plot.Subsampled_Network_Metrics: no visible global function definition
  for ‘everything’
plot.Subsampled_Network_Metrics: no visible binding for global variable
  ‘SubsampleSize’
plot.Subsampled_Network_Metrics: no visible binding for global variable
  ‘Value’
plot.Width_CI_matrix: no visible binding for global variable
  ‘sample_size’
plot.Width_CI_matrix: no visible binding for global variable ‘ci_width’
plot.bootstrapped_pvalue_matrix: no visible binding for global variable
  ‘SampleSize’
plot.bootstrapped_pvalue_matrix: no visible binding for global variable
  ‘PValue’
plot.bootstrapped_pvalue_matrix: no visible binding for global variable
  ‘Metric’
plot.list_node_level_CI: no visible binding for global variable
  ‘metric_value’
plot.list_node_level_CI: no visible binding for global variable
  ‘lower_CI’
plot.list_node_level_CI: no visible binding for global variable
  ‘upper_CI’
plot.list_node_level_CI: no visible global function definition for
  ‘scale_x_continuous’
plot.list_permuted_networks: no visible binding for global variable
  ‘MetricValue’
Undefined global functions or variables:
  Metric MetricValue PValue SampleSize SubsampleSize Value ci_width
  distance everything interactions_count lower_CI metric_value
  sample_size scale_x_continuous upper_CI
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [10s/10s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs