###### check anabel ###### # sanity checks include: # no input # missing time point # invalid method name # all model corrections are set to TRUE test_that("run_anabel", { outdir <- "./tests_rslts" run_anabel() %>% expect_error() run_anabel(SCA_dataset, tass = NA, tdiss = 1, tstart = 1, tend = 1, conc = 1) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = NA) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = "") %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, drift = TRUE, decay = TRUE ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, generate_output = "all" ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, generate_output = "all", outdir = " " ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, method = "SCX" ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, generate_output = "okay", outdir = outdir ) %>% expect_error() run_anabel( input = SCK_dataset, tstart = 1, tass = 10, tdiss = 50, tend = 100, conc = 10 * 10^-9, method = "SCK" ) %>% expect_error() run_anabel( input = MCK_dataset, tass = 10, tdiss = 50, conc = 10 * 10^-9, method = "MCK" ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10^-9, outdir = outdir, generate_Tables = TRUE, save_tables_as = "json" ) %>% expect_error() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10^-9, outdir = outdir, generate_Plots = "customized" ) %>% expect_error() # one spot will pass the second will fail run_anabel(SCA_dataset[, 1:3], drift = TRUE, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10^-9, outdir = outdir, generate_output = "customized", debug_mode = TRUE ) %>% is.list() %>% expect_true() run_anabel(SCA_dataset, tstart = 1, tass = 10, tdiss = 30, tend = 100, conc = 10 * 10^-9, quiet = FALSE) %>% is.list() %>% expect_true() %>% suppressMessages() })