* using log directory ‘/srv/hornik/tmp/CRAN/amplysis.Rcheck’
* using R Under development (unstable) (2024-08-17 r87027)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘amplysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘amplysis’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Ziming Su <szm1027170042@outlook.com>’

New submission

License components with restrictions and base license permitting such:
  GPL (>= 3) + file LICENSE
File 'LICENSE':
  YEAR: 2024
  COPYRIGHT HOLDER: amplysis authors

Possibly misspelled words in DESCRIPTION:
  Amplicon (3:31)
  amplicon (12:89)
  rRNA (12:79)

The Title field should be in title case. Current version is:
  ‘Analysis Tools for 16S Amplicon Sequencing Data’
In title case that is:
  ‘Analysis Tools for 16s Amplicon Sequencing Data’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘amplysis’ can be installed ... [16s/16s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    ‘Ziming Su [aut, cre], Xinyu Zhang [aut], Yaqing Liu [aut, cre]’
  Authors@R: ‘Ziming Su [aut, cre] (<https://orcid.org/0009-0008-0203-1106>), Xinyu Zhang [aut] (<https://orcid.org/0009-0008-2909-0384>), Yaqing Liu [aut, cph] (<https://orcid.org/0000-0003-2841-9551>)’

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/20s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [16s/16s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs