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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ameras) Loading required package: nimble nimble version 1.4.2 is loaded. For more information on NIMBLE and a User Manual, please visit https://R-nimble.org. Attaching package: 'nimble' The following object is masked from 'package:stats': simulate The following object is masked from 'package:base': declare > > test_check("ameras") Fitting RC Obtaining profile likelihood CI for dose Obtaining profile likelihood CI for dose_squared RC confidence intervals: lower upper pval.lower pval.upper iter.lower iter.upper dose 0.0000 0.4819 0.86103 0.05005 NA 11 dose_squared 0.1248 0.3885 0.04979 0.04933 7 7 RC confidence intervals: lower upper dose 4.895e-07 2623.6136 dose_squared 1.560e-01 0.4747 Fitting RC RC confidence intervals: lower upper dose 0.5512 1.107 Fitting RC RC confidence intervals: lower upper dose -0.3738 0.4450 dose_squared 0.1282 0.4395 Fitting RC RC confidence intervals: lower upper dose 0.3616 0.5215 Fitting RC RC confidence intervals: lower upper dose 0.15999 0.56649 dose_squared -0.03157 0.07624 Fitting RC RC confidence intervals: lower upper dose_linear 0.08453 0.5362 dose_exponential 0.13782 0.5667 Fitting FMA FMA confidence intervals: lower upper dose 0.09002 0.50119 dose_squared -0.01636 0.09462 Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC Fitting RC RC confidence intervals: lower upper dose 0.44207 0.831795 dose_squared -0.09016 -0.003744 Fitting FMA FMA confidence intervals: lower upper dose 0.46041 0.86356 dose_squared -0.09929 -0.01171 Fitting RC RC confidence intervals: lower upper dose 0.3178 0.5070 dose_squared 0.1702 0.2146 Fitting ERC ERC confidence intervals: lower upper dose 0.3128 0.5019 dose_squared 0.1715 0.2160 Fitting MCML MCML confidence intervals: lower upper dose 0.3904 0.5856 dose_squared 0.1261 0.1704 Fitting FMA FMA confidence intervals: lower upper dose 0.3903 0.5941 dose_squared 0.1183 0.1707 Fitting RC Fitting FMA Fitting RC Fitting RC Fitting RC RC confidence intervals: lower upper (1)_dose 0.28794 0.80052 (1)_dose_squared -0.09643 0.03373 (2)_dose 0.35370 0.79901 (2)_dose_squared -0.10079 0.01751 Fitting FMA FMA confidence intervals: lower upper (1)_dose 0.28329 0.782563 (1)_dose_squared -0.09105 0.031408 (2)_dose 0.36977 0.793583 (2)_dose_squared -0.09809 0.008267 Fitting RC RC confidence intervals: lower upper dose 0.54247 0.69851 dose_squared -0.05454 -0.02564 Fitting FMA FMA confidence intervals: lower upper dose 0.52798 0.68502 dose_squared -0.05629 -0.02592 Fitting RC RC confidence intervals: lower upper dose 0.40549 7.471e-01 dose_squared -0.06804 5.409e-05 Fitting FMA FMA confidence intervals: lower upper dose 0.4272 0.73862 dose_squared -0.0683 -0.01031 [ FAIL 0 | WARN 1 | SKIP 41 | PASS 52 ] ══ Skipped tests (41) ══════════════════════════════════════════════════════════ • On CRAN (41): 'test-CI.R:6:3', 'test-CI.R:8:7', 'test-CI.R:8:7', 'test-CI.R:62:5', 'test-CI.R:62:5', 'test-binomial.R:15:3', 'test-binomial.R:15:3', 'test-binomial.R:15:3', 'test-binomial.R:15:3', 'test-binomial.R:15:3', 'test-binomial.R:42:7', 'test-binomial.R:42:7', 'test-binomial.R:40:3', 'test-binomial.R:42:7', 'test-clogit.R:8:3', 'test-clogit.R:10:7', 'test-clogit.R:10:7', 'test-clogit.R:8:3', 'test-clogit.R:10:7', 'test-clogit.R:39:3', 'test-gaussian.R:8:3', 'test-gaussian.R:8:3', 'test-gaussian.R:8:3', 'test-gaussian.R:8:3', 'test-gaussian.R:10:7', 'test-multinomial.R:8:3', 'test-multinomial.R:10:7', 'test-multinomial.R:10:7', 'test-multinomial.R:8:3', 'test-multinomial.R:10:7', 'test-poisson.R:8:3', 'test-poisson.R:10:7', 'test-poisson.R:10:7', 'test-poisson.R:8:3', 'test-poisson.R:10:7', 'test-prophaz.R:8:3', 'test-prophaz.R:10:7', 'test-prophaz.R:10:7', 'test-prophaz.R:8:3', 'test-prophaz.R:10:7', 'test-prophaz.R:39:3' [ FAIL 0 | WARN 1 | SKIP 41 | PASS 52 ] > > proc.time() user system elapsed 196.25 105.92 302.15