downloading reverse dependencies ... downloading bios2mds_1.2.3.tar.gz ... ok downloading CluMP_0.8.1.tar.gz ... ok downloading Clustering_1.7.10.tar.gz ... ok downloading kgraph_1.0.0.tar.gz ... ok downloading moc.gapbk_0.1.3.tar.gz ... ok downloading plspm_0.5.1.tar.gz ... ok downloading swamp_1.5.1.tar.gz ... ok downloading ChemoSpec_6.1.10.tar.gz ... ok downloading ChemoSpecUtils_1.0.4.tar.gz ... ok downloading hamlet_0.9.6.tar.gz ... ok downloading kselection_0.2.1.tar.gz ... ok downloading opticskxi_0.1.tar.gz ... ok downloading pmml_2.5.2.tar.gz ... ok downloading rattle_5.5.1.tar.gz ... ok downloading REPPlab_0.9.6.tar.gz ... ok installing dependencies ‘amap’, ‘arulesViz’, ‘cairoDevice’, ‘cba’, ‘chemometrics’, ‘ChemoSpec’, ‘ChemoSpec2D’, ‘ChemoSpecUtils’, ‘clusterCrit’, ‘descr’, ‘doMPI’, ‘FactoClass’, ‘hyperSpec’, ‘js’, ‘LDRTools’, ‘multiway’, ‘nbpMatching’, ‘neighbr’, ‘nsga2R’, ‘pmml’, ‘rattle’, ‘readJDX’, ‘RGtk2’, ‘roxut’, ‘sgraph’, ‘speaq’, ‘tester’, ‘toOrdinal’, ‘turner’ Warning: packages ‘cairoDevice’, ‘RGtk2’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘MassSpecWavelet’, ‘som’, ‘CMLS’ begin installing package ‘MassSpecWavelet’ begin installing package ‘CMLS’ begin installing package ‘som’ begin installing package ‘toOrdinal’ begin installing package ‘sgraph’ begin installing package ‘nsga2R’ begin installing package ‘doMPI’ begin installing package ‘tester’ begin installing package ‘ChemoSpecUtils’ begin installing package ‘readJDX’ begin installing package ‘js’ begin installing package ‘clusterCrit’ begin installing package ‘hyperSpec’ begin installing package ‘roxut’ begin installing package ‘nbpMatching’ begin installing package ‘FactoClass’ begin installing package ‘neighbr’ begin installing package ‘rattle’ begin installing package ‘pmml’ begin installing package ‘arulesViz’ begin installing package ‘cba’ begin installing package ‘descr’ begin installing package ‘LDRTools’ begin installing package ‘amap’ * installing *source* package ‘LDRTools’ ... ** package ‘LDRTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LDRTools) * installing *source* package ‘nsga2R’ ... ** package ‘nsga2R’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nsga2R) * installing *source* package ‘neighbr’ ... ** package ‘neighbr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (neighbr) * installing *source* package ‘toOrdinal’ ... ** package ‘toOrdinal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toOrdinal) * installing *source* package ‘tester’ ... ** package ‘tester’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tester) begin installing package ‘turner’ * installing *source* package ‘roxut’ ... ** package ‘roxut’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxut) * installing *source* package ‘js’ ... ** package ‘js’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (js) * installing *source* package ‘MassSpecWavelet’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRXDkLV/R.INSTALL33945219ed1ac6/MassSpecWavelet/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_local_maximum.c -o find_local_maximum.o find_local_maximum.c: In function ‘localMaximumSlidingWindow’: find_local_maximum.c:471:17: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized] 471 | outi[kmax] = 1; | ^ find_local_maximum.c:461:13: note: ‘kmax’ was declared here 461 | int kmax; | ^~~~ find_local_maximum.c:493:17: warning: ‘kmax’ may be used uninitialized [-Wmaybe-uninitialized] 493 | outi[kmax] = 1; | ^ find_local_maximum.c:479:13: note: ‘kmax’ was declared here 479 | int kmax; | ^~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MassSpecWavelet.so find_local_maximum.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRXDkLV/R.INSTALL33945219ed1ac6/MassSpecWavelet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet) begin installing package ‘speaq’ * installing *source* package ‘descr’ ... ** package ‘descr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1yqqhQ/R.INSTALL33949b6959075e/descr/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c descr.c -o descr.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o descr.so descr.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1yqqhQ/R.INSTALL33949b6959075e/descr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-descr/00new/descr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (descr) * installing *source* package ‘readJDX’ ... ** package ‘readJDX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readJDX) * installing *source* package ‘CMLS’ ... ** package ‘CMLS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CMLS) begin installing package ‘multiway’ * installing *source* package ‘turner’ ... ** package ‘turner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (turner) * installing *source* package ‘som’ ... ** package ‘som’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdSfrHs/R.INSTALL33945766c726f8/som/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I. -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c som.cc -o som.o In file included from tntsupp.h:8, from sub.h:1, from SomParam.h:2, from som.cc:4: tnt/fmat.h: In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:227:20, inlined from ‘TNT::Fortran_Matrix& TNT::Fortran_Matrix::operator=(const TNT::Fortran_Matrix&) [with T = double]’ at tnt/fmat.h:217:24, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:34:17: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdSfrHs/R.INSTALL33945766c726f8/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) begin installing package ‘chemometrics’ * installing *source* package ‘sgraph’ ... ** package ‘sgraph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sgraph) * installing *source* package ‘doMPI’ ... ** package ‘doMPI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doMPI) * installing *source* package ‘clusterCrit’ ... ** package ‘clusterCrit’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-14 accepts -g... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0hoWsY/R.INSTALL33947737081734/clusterCrit/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c criteria.c -o criteria.o criteria.c: In function ‘cluc_errorMsg’: criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable] 331 | char msg[128]; | ^~~ gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norms.f95 -o norms.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.f95 -o matrix.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critUtils.f95 -o critUtils.o critUtils.f95:847:26: 847 | sConc(1) = sConc(1) + ip - 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:851:29: 851 | sConc(2) = sConc(2) + (sPNum(1) - iw + 1) | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:855:29: 855 | sConc(1) = sConc(1) + 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c indices.f95 -o indices.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critCalc.f95 -o critCalc.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0hoWsY/R.INSTALL33947737081734/clusterCrit/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-clusterCrit/00new/clusterCrit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterCrit) * installing *source* package ‘cba’ ... ** package ‘cba’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwXcHGd/R.INSTALL33949724357a35/cba/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c arrayIndex.c -o arrayIndex.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ccfkms.c -o ccfkms.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cluster.c -o cluster.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c coding.c -o coding.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dll.c -o dll.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gknn.c -o gknn.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c greedy.c -o greedy.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interpolate.c -o interpolate.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c optimal.c -o optimal.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c proximus.c -o proximus.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rock.c -o rock.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sdists.c -o sdists.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stress.c -o stress.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o cba.so arrayIndex.o ccfkms.o cluster.o coding.o dll.o gknn.o greedy.o interpolate.o optimal.o proximus.o rock.o sdists.o stress.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwXcHGd/R.INSTALL33949724357a35/cba/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cba/00new/cba/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cba) * installing *source* package ‘ChemoSpecUtils’ ... ** package ‘ChemoSpecUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpecUtils) begin installing package ‘ChemoSpec’ begin installing package ‘ChemoSpec2D’ * installing *source* package ‘FactoClass’ ... ** package ‘FactoClass’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjcnmOG/R.INSTALL33948d48d1827f/FactoClass/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FactoClass_init.c -o FactoClass_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmeansw.cc -o kmeansw.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o FactoClass.so FactoClass_init.o kmeansw.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjcnmOG/R.INSTALL33948d48d1827f/FactoClass/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FactoClass/00new/FactoClass/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FactoClass) * installing *source* package ‘amap’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmQVLh0/R.INSTALL33949f7a5d3254/amap/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c acprob.cpp -o acprob.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c burt.c -o burt.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diss.c -o diss.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hclust.cpp -o hclust.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmeans.cpp -o kmeans.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrice.cpp -o matrice.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pop.f -o pop.o pop.f:365:35: 365 | CDIF = ABS(COUTS(I2J2)) - ABS(COUTS(I1J1)) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pop.f:367:39: 367 | CDIF = COUTS(I2J2) - COUTS(I1J1) | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o amap.so acprob.o burt.o diss.o distance.o hclust.o init.o kmeans.o matrice.o pop.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmQVLh0/R.INSTALL33949f7a5d3254/amap/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-amap/00new/amap/libs ** R ** data ** demo ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (amap) * installing *source* package ‘nbpMatching’ ... ** package ‘nbpMatching’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFmBWzV/R.INSTALL33949223a9d232/nbpMatching/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c fcorematch.f -o fcorematch.o fcorematch.f:275:5: 275 | 500 CONTINUE | 1 Warning: Label 500 at (1) defined but not used [-Wunused-label] fcorematch.f:638:5: 638 | 400 CONTINUE | 1 Warning: Label 400 at (1) defined but not used [-Wunused-label] fcorematch.f:415:56: 415 | DOUBLE PRECISION DPLUS(N),DMINUS(N),Y1(N),Y2(N),C0,D,DBEST,YB, | 1 Warning: Unused variable ‘c0’ declared at (1) [-Wunused-variable] fcorematch.f:415:64: 415 | DOUBLE PRECISION DPLUS(N),DMINUS(N),Y1(N),Y2(N),C0,D,DBEST,YB, | 1 Warning: Unused variable ‘dbest’ declared at (1) [-Wunused-variable] fcorematch.f:410:48: 410 | 1 BASIS,KA,KB,DPLUS,DMINUS,Y1,Y2) | 1 Warning: Unused dummy argument ‘dminus’ at (1) [-Wunused-dummy-argument] fcorematch.f:633:55: 633 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),D,DBEST,Y1B,Y2B, | 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] fcorematch.f:627:48: 627 | F Y1,Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,NBEST,DBEST, | 1 Warning: Unused dummy argument ‘eps’ at (1) [-Wunused-dummy-argument] fcorematch.f:633:69: 633 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),D,DBEST,Y1B,Y2B, | 1 Warning: Unused variable ‘y2b’ declared at (1) [-Wunused-variable] fcorematch.f:629:48: 629 | INTEGER BASIS(N),MEM(N),KA(N),KB(N),ZFW | 1 Warning: Unused variable ‘zfw’ declared at (1) [-Wunused-variable] fcorematch.f:528:54: 528 | SUBROUTINE SCAN1(NB1,N,SUP,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘sm’ at (1) [-Wunused-dummy-argument] fcorematch.f:528:62: 528 | SUBROUTINE SCAN1(NB1,N,SUP,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘tmb’ at (1) [-Wunused-dummy-argument] fcorematch.f:211:56: 211 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),C0,D,DBEST,Y1B, | 1 Warning: Unused variable ‘c0’ declared at (1) [-Wunused-variable] fcorematch.f:204:39: 204 | SUBROUTINE AUGMNT(N,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘cc’ at (1) [-Wunused-dummy-argument] fcorematch.f:205:48: 205 | F Y1,Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,DBEST,N1,N2, | 1 Warning: Unused dummy argument ‘eps’ at (1) [-Wunused-dummy-argument] fcorematch.f:205:58: 205 | F Y1,Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,DBEST,N1,N2, | 1 Warning: Unused dummy argument ‘index’ at (1) [-Wunused-dummy-argument] fcorematch.f:204:52: 204 | SUBROUTINE AUGMNT(N,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘ka’ at (1) [-Wunused-dummy-argument] fcorematch.f:204:55: 204 | SUBROUTINE AUGMNT(N,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘kb’ at (1) [-Wunused-dummy-argument] fcorematch.f:204:49: 204 | SUBROUTINE AUGMNT(N,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘mem’ at (1) [-Wunused-dummy-argument] fcorematch.f:205:52: 205 | F Y1,Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,DBEST,N1,N2, | 1 Warning: Unused dummy argument ‘nbl’ at (1) [-Wunused-dummy-argument] fcorematch.f:211:68: 211 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),C0,D,DBEST,Y1B, | 1 Warning: Unused variable ‘y1b’ declared at (1) [-Wunused-variable] fcorematch.f:205:27: 205 | F Y1,Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,DBEST,N1,N2, | 1 Warning: Unused dummy argument ‘y2’ at (1) [-Wunused-dummy-argument] fcorematch.f:212:26: 212 | * Y2B,YB | 1 Warning: Unused variable ‘y2b’ declared at (1) [-Wunused-variable] fcorematch.f:212:29: 212 | * Y2B,YB | 1 Warning: Unused variable ‘yb’ declared at (1) [-Wunused-variable] fcorematch.f:207:48: 207 | INTEGER BASIS(N),MEM(N),KA(N),KB(N),ZFW | 1 Warning: Unused variable ‘zfw’ declared at (1) [-Wunused-variable] fcorematch.f:389:45: 389 | F Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,NBEST,DBEST) | 1 Warning: Unused dummy argument ‘eps’ at (1) [-Wunused-dummy-argument] fcorematch.f:388:28: 388 | SUBROUTINE GROW (N,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB,Y1, | 1 Warning: Unused dummy argument ‘top’ at (1) [-Wunused-dummy-argument] fcorematch.f:391:48: 391 | INTEGER BASIS(N),MEM(N),KA(N),KB(N),ZFW | 1 Warning: Unused variable ‘zfw’ declared at (1) [-Wunused-variable] fcorematch.f:270:56: 270 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),C0,D,DBEST,Y1B, | 1 Warning: Unused variable ‘c0’ declared at (1) [-Wunused-variable] fcorematch.f:270:58: 270 | DOUBLE PRECISION Y1(N),Y2(N),DMINUS(N),DPLUS(N),C0,D,DBEST,Y1B, | 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] fcorematch.f:265:47: 265 | F Y2,DPLUS,DMINUS,SUP,EPS,NBL,INDEX,NBEST,DBEST) | 1 Warning: Unused dummy argument ‘eps’ at (1) [-Wunused-dummy-argument] fcorematch.f:264:27: 264 | SUBROUTINE EXPAND(N,M,TOP,NMATCH,CC,BASIS,MEM,KA,KB,SM,TMA,TMB,Y1, | 1 Warning: Unused dummy argument ‘m’ at (1) [-Wunused-dummy-argument] fcorematch.f:271:26: 271 | * Y2B,YB | 1 Warning: Unused variable ‘y2b’ declared at (1) [-Wunused-variable] fcorematch.f:271:29: 271 | * Y2B,YB | 1 Warning: Unused variable ‘yb’ declared at (1) [-Wunused-variable] fcorematch.f:266:48: 266 | INTEGER BASIS(N),MEM(N),KA(N),KB(N),ZFW | 1 Warning: Unused variable ‘zfw’ declared at (1) [-Wunused-variable] fcorematch.f:580:57: 580 | SUBROUTINE SCAN2(NB,N,SUP,CC,BASIS,MEM,KA,KB,SM,TMA,TMB, | 1 Warning: Unused dummy argument ‘tma’ at (1) [-Wunused-dummy-argument] fcorematch.f:69:29: 69 | * Y2B,YB | 1 Warning: Unused variable ‘yb’ declared at (1) [-Wunused-variable] gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c mwrap.f -o mwrap.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o nbpMatching.so fcorematch.o init.o mwrap.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFmBWzV/R.INSTALL33949223a9d232/nbpMatching/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-nbpMatching/00new/nbpMatching/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nbpMatching) * installing *source* package ‘chemometrics’ ... ** package ‘chemometrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chemometrics) * installing *source* package ‘speaq’ ... ** package ‘speaq’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (speaq) * installing *source* package ‘arulesViz’ ... ** package ‘arulesViz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arulesViz) * installing *source* package ‘pmml’ ... ** package ‘pmml’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pmml) * installing *source* package ‘hyperSpec’ ... ** package ‘hyperSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘apply’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘hyperSpec’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sample’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘hyperSpec’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hyperSpec) * installing *source* package ‘ChemoSpec2D’ ... ** package ‘ChemoSpec2D’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpec2D) * installing *source* package ‘multiway’ ... ** package ‘multiway’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (multiway) * installing *source* package ‘ChemoSpec’ ... ** package ‘ChemoSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpec) * installing *source* package ‘rattle’ ... ** package ‘rattle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rattle) checking amap_0.8-20.tar.gz ... checking bios2mds_1.2.3.tar.gz ... checking CluMP_0.8.1.tar.gz ... checking Clustering_1.7.10.tar.gz ... checking kgraph_1.0.0.tar.gz ... checking moc.gapbk_0.1.3.tar.gz ... checking plspm_0.5.1.tar.gz ... checking swamp_1.5.1.tar.gz ... checking ChemoSpec_6.1.10.tar.gz ... checking ChemoSpecUtils_1.0.4.tar.gz ... checking hamlet_0.9.6.tar.gz ... checking kselection_0.2.1.tar.gz ... checking opticskxi_0.1.tar.gz ... checking pmml_2.5.2.tar.gz ... checking rattle_5.5.1.tar.gz ... checking REPPlab_0.9.6.tar.gz ... Depends: Package: amap Depends: R (>= 3.6.0) Timings: user system elapsed amap 26.851 4.177 31.369 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 5 10 Check results summary: amap ... OK rdepends_bios2mds ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_ChemoSpec ... NOTE * checking Rd cross-references ... NOTE rdepends_ChemoSpecUtils ... OK rdepends_CluMP ... OK rdepends_Clustering ... OK rdepends_hamlet ... NOTE * checking dependencies in R code ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_kgraph ... OK rdepends_kselection ... OK rdepends_moc.gapbk ... OK rdepends_opticskxi ... OK rdepends_plspm ... NOTE * checking Rd cross-references ... NOTE rdepends_pmml ... OK rdepends_rattle ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_REPPlab ... OK rdepends_swamp ... OK